Castanea sativa (European chestnut): 142611447
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Entry
142611447 CDS
T11266
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csaa03036
]
142611447
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
142611447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PHD
PHD_2
PDS5
Cnd1
zf-PHD-like
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
142611447
NCBI-ProteinID:
XP_075639683
LinkDB
All DBs
Position
1:complement(60485327..60510721)
Genome browser
AA seq
1817 aa
AA seq
DB search
MSYPINSGSGSGSGSGQGQRGIGLSNTIHSEVAPCLPLPSLPVFCGASDQDLRLFDEPRS
GGSFRSLNRAEVLSQATRISDLLRQTDVSYLILRDDTRAVPYGYVEPLELHEQVLRCSSE
AFECSTAGPIKEPISTSTVPEKKSFEQSIHITSKAQRDYGATHNYQPDYVVANNISTSSS
RKPKVKKKSSDDFSSSVGPDPAELQDATIGNFCELLEDFCGRAEILSDDRDEAEWLAVPL
SDLRMLINEIMSIRAKKLLHLVPVDILVRLLRVLDHQIHRAEGLTIDECEHSDSDIVSSI
FCALESIHAALAVMAYNQMQKQLYKEEIIERILEFSRRQIMDVMCVYDPSYRALHKPSEN
GGFEGDEDEEFDAELGSASKKRRSNKTVKVKKSSINKVSASVNTILQKMCTILGLLKDLL
LIERLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLISGIFYSYTQHRTYVIDEILQLLW
KLPSSKRALRSYHLPDEEQRQIQMIAALLIQLVHCSANLPEALRQSSSGNPILEVSIDSS
YPVKCHEAATEACCYFWTRVLQRFASLKAQDVSEMKSMMENLVMDLLTTLNLPEYPASAP
ILEVLCVLLLQNAGLKSKDISARTMAIDLLGTIAARLKRDAVLCRRDKFWVLQELVNADG
AADCRYPKDACSICLDGRVEKLFLVCQSCQRSFHADCIGVREHEVPNRSWQCQFCLCRKQ
LLVLQSYCKSQFKDDGKKNQSRSEKNPEASDPITNAEIIQQLLLNYLEDVGSDDVHLFVR
WFYLCLWCKDDPKSQQKFIYYLARLKSKAIIRDPGIASSLLTKDSVKKITLALGQNNSFS
RGFDKILHMLLASLRENSPVIRAKALRAVSIIVEADPEVLCDKRVQLAVEGRFCDSAISA
REAALELVGRHISSHPDVGLKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNANFSEFTN
ACIEILSRVSDDESSIQDLVCKTFYEFWFEEPSGSETQFFGDGSSVPLEVAKKTEQIVEM
LRRMPNHQLLVTVIKRNLALDFFPQSAKAAGINPVSLASVRKRCELMCKCLLEKILQVEE
MNGEEVEVRALPYVLVLHAFCVVDPTLCAPSSDPSQFVVTLQPYLKTQVDNRRVAQLLES
VIFIIDSVMPLLRKLPQIVVEELEQDLKHMIVRHSFLTVVHACIKCLCSVGKVAGKGATV
IEYLIQVFFKRLDAQAIDNKQLVGRSLFCLGLLIRYGNSLLGSSSNKTIDAVSCLSLFKK
YLRVEDFIVKVRSLQALGFLLIARPEYMLDNDIGKIVEATLSSGCDVRLKMQSLQNMYEY
LLDAESQMGTDKANENAVHYSVEGGHSVPVAAGAGDTNICGGIVQLYWDSILGRCLDLNE
QVRQAALKIVEIVLRQGLVHPITCVPYLIALEADPQEVNSKLAHHLLMNMNEKYPAFFES
RLGDGLQMTFIFIQAISGINENVNQKVQSKVIGNVKGKSDGGSVSQARLGVSRIYKLIRG
NRVSRNKFMSSIVRKFDNPSWNDSVIPFLMYCTEILALLPFTSPDEPLYLIYAINRVIQV
RAGALEASMKALNNYLSQKDAEKIPYDNGQLKPAVQPDFNEMTSMDLNGTVQHEPAGQPI
FDHRMSMDLNESIQQDIADQSAFNHSTLVGAKTRSMSSGVSFILSEDDLQKVQADCLAAI
ALQLLLKLKRHLKIVYSLNDARCQAFSPNEPIKPGDVLSRQNIPLNISETRISLPATYQD
LIQRYQEFKNALREDAIDYSIYTANIKRKRPTPRKGRKSVYGGGDEDDIDDEDWTGGVRR
LSNSGRRGNSNRGSRQR
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgagctatccaatcaattcgggttcgggttcgggctccggctcgggccagggccagcgc
ggaatcggactctccaacaccatacactcggaggtcgcgccgtgcttgcctctgccttcg
ctccctgtcttctgcggcgcttccgatcaggacctccgcctcttcgacgagcctcgcagc
ggcggtagcttcaggtcgctcaatcgcgccgaggttctctctcaagctactcgaatctct
gatctgctccgccaaaccgacgtgtcttacttgattctcagagacgatacaagggcagtt
ccatatggatatgtggagcctttagaactacatgaacaagttctacgatgtagttcggaa
gcatttgagtgcagtactgcaggtcctattaaggagccaatctctaccagtacagtacct
gaaaagaagtcctttgagcaaagcatacatattacaagtaaagctcaaagagactacggg
gcaactcacaattatcaacctgactatgttgtagctaataacatatcgacatcatcttct
agaaaaccaaaagtaaagaagaaaagtagcgatgatttctcatcatcggttggaccagat
cccgctgagcttcaagatgccaccattggaaacttttgtgagttgttggaggacttctgt
ggtagagctgaaattcttagtgatgatcgggatgaagcagagtggttagcagtgcctctt
tctgatcttaggatgctaataaatgaaataatgtctatccgtgcaaagaaacttctacat
ttggttcctgtagatattcttgttaggcttttaagggttcttgatcatcaaatacatcga
gcagaaggcttgaccattgatgaatgcgagcattcagattcagatatagtttcatcaatc
ttttgtgctctggagtccattcatgcagctctagcagtaatggcttataaccaaatgcaa
aagcagctctataaagaagagattattgaaagaattctagagttttccaggcgtcaaata
atggatgtcatgtgtgtttatgatccatcatatcgtgccttgcataaaccaagtgaaaat
gggggatttgaaggtgatgaagatgaagagtttgatgctgaacttggttcggcaagcaag
aaacgacgtagcaataagactgttaaagtgaagaaatcgtcaataaacaaggtctctgcc
tctgtgaatactattcttcagaaaatgtgcactattcttggtttactcaaggatttgttg
ttaatagagaggttgtcggatagttgcattttacaacttgtgaagacaagctttacgaca
ttcttggtggacaatatccagctcttgcaactgaaggcaattggtttaataagcgggata
ttctattcatacacacaacatcgtacttatgtaatagatgaaatacttcagctactttgg
aagttaccatcctcaaagcgagcactaagatcctaccacctgcctgatgaagaacaaagg
cagattcagatgattgctgctttgctgattcagttggtgcattgtagtgcaaaccttcct
gaagctttaaggcaatcatcaagtggtaatcccatcttagaagtctcgattgattctagt
taccctgtaaaatgccatgaggcggccacagaggcatgttgttatttttggacccgtgtg
cttcagcgctttgcaagtttgaaggctcaagatgtttctgagatgaaatcaatgatggag
aatcttgttatggatttgctgacaacgttgaatttacctgaatatcctgcttcagctcct
attctggaggttctgtgtgtcttgttacttcagaatgctgggctgaaatctaaagacatc
tctgcacgtacgatggctatcgaccttcttggtacaatagctgcgagattgaagcgtgat
gctgtactttgcagaagggacaaattttgggtattgcaggaactggttaatgctgatggt
gctgctgattgcagatatccaaaagatgcatgttctatatgtttggatggaagggttgaa
aaattgttccttgtatgtcaaagttgtcagagatcatttcatgctgattgcattggagta
agagaacatgaagttcctaacagaagctggcagtgtcagttttgcctctgcaggaagcaa
cttcttgtattacaatcatactgcaagtcgcagtttaaggatgatggtaaaaagaatcag
agtcggtcagaaaaaaatcctgaagcttctgatccaattacaaatgctgaaatcattcaa
cagctgctattgaattaccttgaagatgttggttctgatgatgttcatctctttgttcgc
tggttttatctctgcctgtggtgcaaggatgatcctaaatctcagcagaagttcatttac
taccttgctagattgaaatcaaaagcaataatacgtgatcctggaattgcttcttcgttg
ttaacaaaggattcagtcaagaagattactttagcattgggacaaaataactctttttct
agagggtttgataagattcttcatatgcttttggcaagtttgagggagaactctcctgta
attagagctaaggccctaagagcggttagtattattgtagaagctgatcctgaggtatta
tgtgataaacgtgtgcaattggctgtagaaggaaggttttgtgactctgcaatatccgca
agggaagcggcgttggaacttgtgggcaggcatatttcttcacatcctgatgttggtttg
aagtactttgagaaggttgctgagagaatcaaagacactggagttagtgttcgaaaacga
gctattaaaatcattcgagatatgtgcacttctaatgccaacttctctgaatttacgaat
gcgtgtattgagatcctttctcgtgttagtgatgacgaatctagtattcaggatcttgtt
tgcaagacattctatgagttctggtttgaggaaccttctggttcagagactcagtttttt
ggagatggtagttctgttccacttgaggttgctaaaaaaactgagcaaattgttgagatg
ttgaggaggatgccaaatcaccaacttcttgtcactgtcattaagcgcaacttagctctt
gatttttttccacaatcagccaaagctgctgggatcaaccctgtatctctcgcatcagtg
cgtaagcgttgtgaattgatgtgcaagtgcttattggaaaagatattacaggtagaggaa
atgaatggtgaggaggtggaggtgcgtgcacttccttatgtgcttgtcttgcatgcattt
tgcgttgtggacccgaccctctgtgccccgtcctctgatccttcccagtttgtggttact
ctacagccatatcttaagactcaggttgataatcgaagggttgctcagttactggagagt
gttatttttataattgattctgttatgccattgcttcgaaagttacctcaaattgttgtt
gaagaactcgagcaagacttgaagcacatgattgttcggcattccttcttgacagttgtt
catgcttgcatcaagtgcctttgttctgtgggcaaagttgctggaaaaggtgctactgtg
attgagtatcttattcaggtgttctttaaacgtttggatgcccaggcgattgacaataag
cagctagttgggcggtcccttttttgccttggattgcttatccgctacggcaattctttg
ctgggcagctccagtaacaaaactattgatgctgtcagttgtctcagcttgttcaaaaaa
tatctccgagtagaggatttcattgtaaaggttagatcattgcaggcattaggatttctt
ctaattgctcggcccgagtacatgttggataatgatattgggaaaatagtagaggcaact
ttgtcttctggctgtgatgttcgccttaagatgcaatcattgcaaaacatgtatgagtat
cttcttgatgcggaaagtcaaatgggaacagataaagcaaatgaaaatgcagttcattat
tctgtagaaggtggccacagtgtacctgtagctgcgggtgctggagatactaatatatgt
gggggtatagttcagttatattgggatagtattttaggtagatgtttggacttaaacgaa
caagttcgccaagcggcccttaagattgttgaaattgtgctgcgccaaggtcttgttcat
cccatcacttgtgtcccataccttatagctctggaagcagatccgcaggaggtgaattca
aagttggctcatcatttgctgatgaacatgaatgagaagtaccctgcattttttgaaagc
cgtttgggggatggccttcaaatgacattcatttttatacaagccataagtggcattaat
gaaaatgtaaaccagaaggtccagtccaaggttataggaaatgtgaaggggaaatctgat
ggtggctctgtctctcaagcaaggcttggagtttctagaatttacaagctcatccgtggt
aaccgggtttcaagaaacaaatttatgtcctcaatcgtgagaaagtttgataacccaagc
tggaatgattctgtaatccctttcctgatgtactgtactgaaatacttgctttgcttcca
ttcacatcccctgacgagccactgtatttgatctatgctataaatcgagtaatacaagtt
agggctggggcacttgaggcaagtatgaaagccctgaataattatttgtcacaaaaagat
gcagagaagataccttatgacaatggacaactaaagccagctgttcagcctgatttcaac
gagatgacttccatggatttgaatgggacagttcagcatgagccagctggtcagcctatc
tttgatcataggatgtcaatggatttgaatgagagtattcaacaagatattgctgatcag
tcagcctttaatcatagtaccttagtgggggcaaaaacgcgtagtatgagctcaggtgtt
tcttttattctttcggaagatgatctgcagaaagtccaggctgactgtcttgcggcaatt
gcattgcagcttcttttgaagctaaagaggcaccttaaaattgtctatagcctgaatgac
gctcggtgccaggctttttctcctaatgaacccataaaaccaggagacgttctctccaga
caaaacattccccttaacatcagtgaaacacgcatcagtttgcctgccacttatcaagat
ctgatacaaagatatcaggaattcaagaatgctttgagagaagatgctattgattactcg
atttatacagcaaatataaagaggaaacgccctacccccagaaaaggacggaaatctgta
tacgggggaggtgacgaagatgatattgatgatgaagactggacaggtggggttcgaagg
ctaagtaatagtggcaggagaggtaacagcaataggggaagtaggcaacgatga
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integrated database retrieval system
