KEGG   Castanea sativa (European chestnut): 142611622
Entry
142611622         CDS       T11266                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03030  DNA replication
csaa03410  Base excision repair
csaa03420  Nucleotide excision repair
csaa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    142611622
   03410 Base excision repair
    142611622
   03420 Nucleotide excision repair
    142611622
   03430 Mismatch repair
    142611622
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csaa03032]
    142611622
   03036 Chromosome and associated proteins [BR:csaa03036]
    142611622
   03400 DNA repair and recombination proteins [BR:csaa03400]
    142611622
DNA replication proteins [BR:csaa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    142611622
  DNA Replication Termination Factors
   ELG1-RFC complex
    142611622
Chromosome and associated proteins [BR:csaa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    142611622
DNA repair and recombination proteins [BR:csaa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     142611622
  Check point factors
   HRAD17(Rad24)-RFC complex
    142611622
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Rad17 Mg_chelatase AAA_16 AAA_lid_RFC1 Viral_helicase1 RuvB_N RCF1-5-like_lid nSTAND3 AAA_11 AAA_5 AAA_28 AAA_assoc_2 AAA_19 DNAX_ATPase_lid AAA_25 MeaB RNA_helicase AAA_30 ABC_tran bpMoxR IstB_IS21 AAA_24 KTI12 AAA_3 AAA_18 NTPase_1 AAA_7 SLFN-g3_helicase NPHP3_N AAA_29 T2SSE DO-GTPase1
Other DBs
NCBI-GeneID: 142611622
NCBI-ProteinID: XP_075639827
LinkDB
Position
10:complement(15523924..15528286)
AA seq 337 aa
MAASSSSSSGGSSSSGYDMPWVEKYRPNRVADIVGNEDAVSRLQVIARDGNMPNLILSGP
PGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKV
VILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQE
ILGRLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQ
PHPLHVKNMVRNVLEGRFDESCSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFM
KETGFAHMRICDGVGSYLQLCGLLAKLALVRETAKAA
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggctgcttcttcttcttcttcgtctggagggagctcgagcagtggctacgacatgcca
tgggtagagaagtaccgtcccaacagggtcgccgacatcgtgggcaacgaggatgccgtg
tccaggctccaagtcatcgctcgcgacggcaacatgcccaacctcatcttatccggtcct
cctggaaccggtaagaccacgagcatactggcgctagcacatgagcttctgggaccaaat
tataaggaggctgttttggagctaaatgcatcagatgacaggggaatagatgttgtaagg
aacaagattaagatgtttgctcaaaagaaagtgacactgccccctgggcggcacaaggta
gtaatcttggatgaagctgacagcatgacatctggagcacagcaagctttgagaaggaca
atggaaatatattcaaactccactcgttttgctcttgcgtgcaatacttcttctaaaatt
attgagcctattcaaagtagatgtgctattgttcgattttcaagattatctgatcaagag
atacttggtcgtctcatggtggtggttgaagctgaaaaggttccctatgttccggaaggt
cttgaagccataattttcactgctgatggtgacatgaggcaggcattgaataacttgcag
gctacatacagtggtttccgttttgtcaaccaagaaaatgttttcaaggtttgcgatcaa
cctcatccattgcatgtgaagaacatggtgcgcaatgtactagaagggagatttgatgaa
tcttgttctggtctcaagcagctctatgatttgggctattcccccaccgacataatcaca
accctattccgcatcatcaaaaactatgatatggctgagtatctaaaattggaattcatg
aaggaaactggatttgcccatatgagaatctgtgatggagttggttcatatcttcagctc
tgtggtcttttggctaagcttgctctggttcgagaaacagctaaagctgcataa

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