Castanea sativa (European chestnut): 142611963
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Entry
142611963 CDS
T11266
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142611963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csaa03400
]
142611963
DNA repair and recombination proteins [BR:
csaa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
142611963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
142611963
NCBI-ProteinID:
XP_075640221
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All DBs
Position
10:8285955..8292095
Genome browser
AA seq
1185 aa
AA seq
DB search
MDYSLPIASRTRQGRAQFYEDCIVEKKKKKGRKESNGVDLAGSSRPHRVDGVKGYERLGS
ESESFAVSDGSVEEIDVDDCSEEGDELMDFVGDESLKLKNKGNSNKGFEGMANVDEIMLD
DSDDEVVILGEGRDFDWEEREEDVICIDVDEEDDMSEKDVTESGELNSDWRRGNDEPVSL
RKGKGETSSLNIGERKSSEDGCGDAVFDDSCDAVRNSSLESSSCEEDKDDEDDQDYEVEK
LETCASLEQLSSDNGGEEEEKGEDAEEFEVVKRGSHGRGRPKGVDVGLKRRKYGLELLVD
VENDEDNCVARRTRSCFVSKLGKKKMKLGTLSHPLCVDEEEVESSSGHDDSDDGADDVGN
GGVKAGSNDESEDYSSDDESGHGGKIKSVSASEKFKTNRGNIDACERNLHGKDIGKLKIP
IKGNRIRLSKNCNVLTILADSILEKGDRLEELVSFRDESNPPVAEISLPLKFTFGIQESN
PPEKSEEEKEMDKLWADMELALRSSEIGYVEDEDSLPPEDEVDRATLCHQGYHQLILDEE
VGLRCEFCPHVQLEIKYIVPDFSRNPFRQSDRRDSGAMNNSIVDELRSQDWSGDSLSNCD
PQLRAEGTVWDIIPGIKNSLYPHQCEGFEFIWKNIAGGIHLQKLKHQTTCAGGSGCIISH
APGTGKTRLTIVFLQTYMKLHPTCRPVIVAPRSMLLTWEEEFRKWDFDIPFHNLNKNELS
GKEKLRQDGHMNLSVIRMVKLYSWKKDRSILGISYTLFEKLAGEVNKKDKVRTEQDYHFR
KILLEVPGIVVLDEGHIARNPDSRILQVLSNIKTDKRIILSGTPFQNNFYELYNTLCLAR
PVFEDKEGKWLSLTSSITKVTDDRLKYEKLKKVRDMIQPFVHVHKGFILQEKLPGLRDSL
VILQPSQLQKSLFEELRDHFVRSNFKFDHYESLISLHPSLLLQCGDDSFPSDKHKLEKSN
LEAGVKAKFLIELIRLSEAVNEKVLVFSQFLEPLAFIKDQLKYHFNWNEGKEMLYMDGKH
SMEQRQSSINVFNDPTSEARVLLASIKASREGINLVGASRVVLLDVVWNPSVERQAICRA
YRLGQKKVVYIYHLIASGAREEAKYYRQTEKDLLSELVFCSSGRGCDQQKISRTVSDDKI
LEEMVQHDKLKYMFEKIAYQQKESKLIETYSWLEKEPVTSSPSSP
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggattatagtttgccaatagctagcaggaccagacaagggcgagcccagttttatgaa
gactgtattgtggagaagaagaagaagaaggggaggaaggagagtaatggggttgacttg
gctggttctagcaggccccatagagttgatggggttaaagggtatgagagattagggtct
gagagtgagtcttttgctgtgtctgatggtagtgtggaggagattgatgtggatgattgt
agtgaagaaggagatgaattgatggattttgtgggggatgagagtttgaagttgaagaat
aagggaaattcaaataagggttttgagggaatggccaatgtggatgaaattatgctggat
gatagtgatgatgaggtggttattttgggcgaaggaagagattttgactgggaagagaga
gaggaggatgttatttgtatagatgttgatgaggaggatgatatgagtgagaaagatgtg
actgaaagtggtgaactgaattctgattggaggaggggtaatgatgaacctgtttcattg
agaaaaggaaagggtgagactagtagcttgaacataggtgagaggaagagtagtgaggat
ggttgtggtgatgctgtgtttgatgattcatgtgatgctgttagaaactcatcgctagaa
tcatcctcttgtgaagaggacaaagatgatgaggatgatcaggattatgaagtggaaaag
ttggaaacttgtgctagtttggagcaattgagttcggataatgggggtgaagaggaggaa
aaaggggaagatgctgaggaatttgaggttgtgaagagagggagtcatgggagggggagg
ccaaaaggagttgatgttgggttgaagaggaggaagtatggattggaattgttggttgat
gtagagaatgacgaagataattgtgtggctcgaagaacccgttcttgttttgtatcaaaa
ttgggaaaaaagaaaatgaagctcggaactttaagtcacccactttgtgttgatgaggag
gaagtggagtcttcatccgggcatgatgatagtgatgatggtgctgatgatgttggcaat
ggtggtgtgaaggctgggtctaatgatgagagtgaagattattctagtgatgatgagtct
ggtcatggtggtaagataaaatctgtgtctgctagtgagaaatttaaaactaacagaggc
aacatagatgcttgtgagaggaatttacatgggaaggatatagggaagttgaagatacca
atcaagggaaatcgcatccgtttgtcaaaaaattgtaacgttttgacaattcttgcggat
tccattttggagaagggagatcgtttggaagaattggtttcttttagagatgaaagtaat
cccccagttgctgagatatctctcccattgaagttcacttttggaattcaggagtcgaat
ccaccagagaaatcagaagaagagaaagaaatggataaactttgggctgatatggagtta
gctcttagatcgagtgaaattggttatgttgaagatgaagattcccttcctccagaggat
gaagttgatagagctaccctttgccatcaagggtatcatcagcttattcttgatgaagaa
gttggacttagatgtgaattttgcccacacgtgcaactggaaatcaagtatattgtacca
gattttagtagaaatccttttagacaatcagacaggagagactcaggtgcaatgaacaat
tccatcgttgatgagcttaggtctcaagactggtctggtgattccctctctaactgtgat
ccccaacttcgagctgaaggcaccgtgtgggacatcattcctggtataaaaaatagtttg
tatccacatcaatgtgaaggttttgaatttatttggaagaatatagctggaggaattcat
cttcagaagttgaaacatcaaacgacttgtgctggtgggagtggctgcattatatcacat
gctcctgggacaggaaaaacccgtttaaccattgtttttcttcagacgtacatgaaatta
catcccacatgcaggcctgtcattgttgctcctcgtagcatgctccttacatgggaagag
gagttccggaaatgggattttgacatcccatttcacaatctgaacaagaatgagttgtca
ggcaaggaaaagctgaggcaagatggacacatgaacctaagtgtaatccgtatggtaaag
ttgtattcctggaaaaaggatagaagcatcctggggatcagttacacactgtttgaaaag
cttgctggagaagttaataaaaaggataaagtaaggactgaacaagattatcatttcagg
aagatccttcttgaggttcccggtattgtagtccttgatgaagggcacattgctcgcaat
cctgatagtcgtatcctacaggtgttgtcaaatataaaaacggataagcgcatcatcctt
tcgggaactccttttcaaaataatttttatgagctttataatacgctatgcttggcaagg
ccagtgtttgaagacaaagaaggtaaatggttatctcttacgagttccattactaaagtc
actgatgataggctgaaatatgagaaactgaagaaggttagagatatgattcagccattt
gttcatgtacacaaaggcttcatactacaagaaaaacttccagggctgagggactctttg
gttatattacagccatcccagctgcagaagagcctctttgaggaactccgtgatcatttt
gtaaggtccaacttcaaatttgatcattatgaatctttgatttctctccacccttcactg
ttgcttcagtgtggagatgacagttttccttctgacaagcataaattagaaaaatcaaat
cttgaggctggagtcaaagcaaaatttttaattgaactcatccggctttccgaggctgtg
aatgaaaaagttttggtttttagtcaattccttgaaccgttagcctttataaaggaccag
cttaagtatcatttcaattggaatgaaggaaaagagatgttgtatatggatggtaagcat
agtatggagcagcgccaatcctcaattaatgttttcaatgatccaactagtgaagcaagg
gtattattagcatcaataaaggcaagccgtgaagggataaatctggttggggcttcaagg
gttgttttactggatgtggtatggaatccgtcagttgaaaggcaagcaatatgtcgtgca
tataggcttgggcagaaaaaggtagtatacatataccatctcattgcttctggtgcaagg
gaagaagcaaagtattatcgacaaactgagaaggacttgttgtctgagttagtattctgt
tcttctggcaggggttgtgatcagcagaaaatctcccggacagtctcagatgataaaatt
ttggaagagatggttcaacatgataaacttaagtatatgtttgaaaagatagcataccaa
cagaaagagtctaaactgattgagacttatagctggttggagaaagaaccagtaacatcc
tcaccatctagtccttga
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