KEGG   Castanea sativa (European chestnut): 142612982
Entry
142612982         CDS       T11266                                 
Name
(RefSeq) THO complex subunit 4D-like
  KO
K12881  THO complex subunit 4
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03013  Nucleocytoplasmic transport
csaa03015  mRNA surveillance pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142612982
  09122 Translation
   03013 Nucleocytoplasmic transport
    142612982
   03015 mRNA surveillance pathway
    142612982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142612982
   03041 Spliceosome [BR:csaa03041]
    142612982
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     142612982
    TREX complex
     142612982
Spliceosome [BR:csaa03041]
 Complex C
  Other components
   EJC/TREX
    142612982
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142612982
SSDB
Motif
Pfam: RRM_1 FoP_duplication GRP0 CFAP143
Other DBs
NCBI-GeneID: 142612982
NCBI-ProteinID: XP_075641277
LinkDB
Position
1
AA seq 290 aa
MATALDMSLDDLIKNRGSRERVRGRGRVRRGRGPGRAPGGGRMPGPFRRGPLAVNPRPSA
YTIAKSVRRSRNFPWQHDLFEESLRAAGIPGIEIGTKLYVSNLDSGVTNEDIRELFAEIG
DLKRYAVHYDKNGRQSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMRIEIVGANSDVPVS
ARVNVTGVNGRRKRTVVMTPRAGPIEGSAAVKRGSGQSRRGGARGGRARGRGRGRGQGQG
QGQGRGRGQVQGQGQGQGRGRGREKNQAVEMSVDELNDDLDSYHAGAKHT
NT seq 873 nt   +upstreamnt  +downstreamnt
atggctactgcattggatatgtcacttgatgatcttattaaaaatagaggttcccgtgag
agagttagagggcgaggtagagttcgccgtggccgtggaccaggcagggcccctggtggt
ggaagaatgcctgggccatttcgtagaggtcctcttgcagtgaatccgcggccatcagca
tataccattgccaagtctgtccgcagaagcaggaatttcccatggcagcatgatttattt
gaagagagccttagagctgcagggatacctgggatagaaattggcacaaagttatatgtt
tccaacttggattctggagtgactaatgaagatataagggaactctttgccgagattggg
gacctgaaaagatatgcagttcattatgacaaaaatggtcgccaaagtggttcagctgaa
gttgtgtataccagaagaagtgatgcctttgcggctcttaagcggtataataatgttctc
ttggatggaaggcccatgaggattgaaattgttggtgccaattcagatgtgcctgtctca
gctcgtgtgaatgttactggagtaaatggaaggaggaagaggacagttgttatgacgcct
agggcaggtccaattgaaggctctgctgcagttaagcgtggctctggtcaaagccgacgt
gggggtgcaaggggtggccgcgcacggggtcggggtaggggccgaggtcaaggtcaaggt
caaggtcaaggacgaggtaggggtcaggtccaaggccagggccagggccagggccggggt
cggggtcgtgaaaagaatcaagcagttgagatgtctgtggatgaacttaatgatgacctg
gatagctatcatgctggagctaagcacacttga

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