Castanea sativa (European chestnut): 142612982
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Entry
142612982 CDS
T11266
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142612982
09122 Translation
03013 Nucleocytoplasmic transport
142612982
03015 mRNA surveillance pathway
142612982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142612982
03041 Spliceosome [BR:
csaa03041
]
142612982
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142612982
TREX complex
142612982
Spliceosome [BR:
csaa03041
]
Complex C
Other components
EJC/TREX
142612982
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142612982
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
GRP0
CFAP143
Motif
Other DBs
NCBI-GeneID:
142612982
NCBI-ProteinID:
XP_075641277
LinkDB
All DBs
Position
1
Genome browser
AA seq
290 aa
AA seq
DB search
MATALDMSLDDLIKNRGSRERVRGRGRVRRGRGPGRAPGGGRMPGPFRRGPLAVNPRPSA
YTIAKSVRRSRNFPWQHDLFEESLRAAGIPGIEIGTKLYVSNLDSGVTNEDIRELFAEIG
DLKRYAVHYDKNGRQSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMRIEIVGANSDVPVS
ARVNVTGVNGRRKRTVVMTPRAGPIEGSAAVKRGSGQSRRGGARGGRARGRGRGRGQGQG
QGQGRGRGQVQGQGQGQGRGRGREKNQAVEMSVDELNDDLDSYHAGAKHT
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcattggatatgtcacttgatgatcttattaaaaatagaggttcccgtgag
agagttagagggcgaggtagagttcgccgtggccgtggaccaggcagggcccctggtggt
ggaagaatgcctgggccatttcgtagaggtcctcttgcagtgaatccgcggccatcagca
tataccattgccaagtctgtccgcagaagcaggaatttcccatggcagcatgatttattt
gaagagagccttagagctgcagggatacctgggatagaaattggcacaaagttatatgtt
tccaacttggattctggagtgactaatgaagatataagggaactctttgccgagattggg
gacctgaaaagatatgcagttcattatgacaaaaatggtcgccaaagtggttcagctgaa
gttgtgtataccagaagaagtgatgcctttgcggctcttaagcggtataataatgttctc
ttggatggaaggcccatgaggattgaaattgttggtgccaattcagatgtgcctgtctca
gctcgtgtgaatgttactggagtaaatggaaggaggaagaggacagttgttatgacgcct
agggcaggtccaattgaaggctctgctgcagttaagcgtggctctggtcaaagccgacgt
gggggtgcaaggggtggccgcgcacggggtcggggtaggggccgaggtcaaggtcaaggt
caaggtcaaggacgaggtaggggtcaggtccaaggccagggccagggccagggccggggt
cggggtcgtgaaaagaatcaagcagttgagatgtctgtggatgaacttaatgatgacctg
gatagctatcatgctggagctaagcacacttga
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