Castanea sativa (European chestnut): 142613327
Help
Entry
142613327 CDS
T11266
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142613327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142613327
Enzymes [BR:
csaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
142613327
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
142613327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
142613327
NCBI-ProteinID:
XP_075641745
LinkDB
All DBs
Position
10:37646791..37653981
Genome browser
AA seq
769 aa
AA seq
DB search
MAGPESPNGSSLQKRFGITKPISVAGPTETDLIRNMDLEKFLLDSALYESEEEGVRREEV
LARIGEIVKGWVKQLTRQRGYTEQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYV
NRDEDFFIILHNILAEMEEVTELQPVHDAHVPVMKFKFLGISIDLLYASISLLVVPEDLD
ISHESVLYNVDEPTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGF
LGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPR
KNPRDRLHHMPIITPAYPCMNSSYNVSASTLRVMMEQFHHGNKICEEIELNKAQWSALFD
PYIFFEAYKNYLQVDIIAADVDDLLAWKGWVESRLRQLTLKIERDTNGMLQCHPYPNEYV
DMSKPCPHCAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMFWKPGMDIFVSHVR
RKQLPSFVFPDGYKRSRLSRHISQQPERPCDNAVGCLSGSSERGLKRKNDPEMVDLKPDK
PEKRVSISPQLPESVSPESSRLECSITGDVDSNAEVRSSSGQLGGEEGIIGNHVQMDGTV
VHDSVTLREKIFVCKSNFPEVRNEVMPTEAVEKPSPRRELLASCEVPNSLAGETCQIGLN
GDKVGMAYMESAETGSTGRLLNWTEGAVDAAQELVKPCNQTMGKENAESVFEPSCNTQNL
SCEGDVCAADLVSPLENGCSNASGVFQDSLSEDLEVLHHHTCYVSSNCA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcgggccccgagagtccaaacggttcttcgctgcagaagaggtttggcatcacaaag
ccaatctccgttgccggtcccaccgagactgatcttatacgcaatatggatttggaaaag
ttcttgcttgattcggcgctttacgagagtgaggaagaaggtgtgaggagagaagaggtt
ctggctcgcattggtgagattgtaaaaggttgggtgaagcaattaacccgccagagaggc
tacacagagcagatggtggaggatgctaatgctgtcatttttacttttggttcttatcgt
ttgggggtacatgggccaggggctgacatagacacattgtgtgttgggccatcttatgta
aatcgagatgaagatttttttataatcttgcataatattctggctgaaatggaagaagtt
actgagcttcagccagttcatgatgctcatgtcccagtaatgaaattcaagttcctgggg
atatcaattgatcttctttatgcaagcatatctcttttggttgttccagaagacctggac
atatcacatgagtctgtgttgtacaatgtcgatgagccaaccgttcgaagtcttaacggc
tgcagggttgctgatcaaattcttaaacttgtgccaaatgttgagcactttcgtatgaca
ctcagatgtttgaagttttgggctaaaaggcgaggtgtttattcaaatgtcactggattc
ctaggtggtgtaaattgggctcttttagttgctcgggtatgtcagctctatcccaatgca
attccgagtatgctggtatctcgattcttcagagtttatacacagtggcgttggccgaac
cctgtgatgttatgttcaatagaagagaatgaactagggtttcctatatgggatcctcgc
aaaaaccctagggatcgacttcatcacatgccaattataactcctgcatacccctgcatg
aattctagctacaatgtctcagcaagtactcttcgtgtaatgatggaacaattccaccat
ggtaacaagatctgtgaggagattgagctgaacaaagcccagtggagtgctctgtttgat
ccgtatatattttttgaggcttacaaaaactatttgcaggtggacataattgcagctgat
gttgatgatttgctagcttggaagggatgggtggagtctcgacttagacagcttacatta
aagatagagcgggacacaaatgggatgctgcagtgccacccttatccaaatgaatatgta
gacatgtccaagccatgtccacattgtgctttctttatgggattgcaaaggaaagaggga
gttaggggtcaagaaggacagcaatttgatatacgtggaacagttgatgaatttaggcaa
gagataaatatgtatatgttttggaaaccagggatggatatttttgtttctcatgttcgt
cgaaagcagcttccctcttttgttttccctgatggttataaacgttctcgattgtcaagg
cacataagccagcagcctgaaaggccttgtgacaatgctgtggggtgcttgtctggttct
tctgaaagaggtctcaagaggaaaaatgatcctgaaatggtggatctgaagcctgacaaa
ccagagaagcgagtctctattagtccgcaactaccggagtcagtttctccagaaagtagt
agattagagtgttcaataactggggatgtagatagcaatgctgaggttaggtcatccagt
ggccagttggggggtgaagagggtatcataggaaatcatgtgcagatggacggaacggtt
gttcatgactctgtcaccctaagagagaaaatttttgtatgtaaatctaattttccagaa
gttaggaatgaggtaatgccaactgaagcagtggagaaaccttcacccaggagggagttg
cttgcttcatgtgaagtacctaattctctagctggggaaacatgtcagattggactgaat
ggggacaaagttgggatggcatacatggaaagtgcggagactggatctactggaagactg
ctaaattggacagagggtgctgttgatgctgctcaagaattagtcaaaccatgtaatcag
acaatgggtaaagaaaatgccgaaagcgtattcgaaccaagttgcaatactcaaaacctc
agttgcgagggtgatgtatgtgcggcagatcttgtctcgcctttggaaaatgggtgttcc
aatgcaagcggagtatttcaagacagtttgtctgaagacttggaggtcctgcaccaccat
acgtgctatgtttccagtaactgtgcataa
DBGET
integrated database retrieval system
