Castanea sativa (European chestnut): 142613336
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Entry
142613336 CDS
T11266
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csaa04131
]
142613336
Membrane trafficking [BR:
csaa04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
142613336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Motif
Other DBs
NCBI-GeneID:
142613336
NCBI-ProteinID:
XP_075641761
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All DBs
Position
10:10759464..10769698
Genome browser
AA seq
1477 aa
AA seq
DB search
MASNPPFHVEDQTDEDFFDKLVDDEFGPTTTTAGSNPKFSEEVDPKFAEGSDSDEAKAFG
NLSISEAGNQLDESVRGGGGGSSEAEGEGGGDSSGFGLKGTQEEKDCVGGGAGAESLGAH
VEERDSLVSANSIGCDSVVGSSNDGIGSEFASDLTVSKSSGSGGSGVKEIGWNSFHADSA
PQNGSHGFGSYSDFFSELDGNSGDFPGNVVGNLNSEAKMVTGNEGFAADGVNNSVNYVNY
QEGQGQGQVYGATVDQSSNVQDLSSSQYWENAYPGWKYDPNTGNWYQVGGDDGSTNVQTS
EWSAVADGHSEISYTQQTAQPVVGTATDTGMTGSVSNWNQVSQGNNGTESVSNWKQVSQV
NNGTESVSNWNQVSQVNNGYPEHMVFDPQYPGWYYDTIAQEWRALDTYTSSIQSTAQTPD
QQQHQNGFVSTGSFNQINNGLYGEYGQADKYRSQGFGSQGQDGSWAGAYGNNHQQELNSW
QAETVPRSEGITTLGGNQHFDSSYVNNDQQKSFNSFGPVSSYNRASQSHGEANGNVEFKS
SVPGGNFSQQFSPANLKLNEQTQFSGDYFGSQPVNFSQQPFESVHQTSYASNVGRSSAGR
PPHALVTFGFGGKLLVMKNSNSSLSSSSFGSQDLVGSSLSVLNLMEVVLGNADASSLGSG
TSDYFHALCQQSFPGPLVGGSVGGKELNKWIDERITSCELPNMDYRKGEALRLLLSLLKI
ACQHYGKLRSAFGADTVLRENDSPESAVAKLFASAKRNSTQFSEYDALSHCLQKLPSEGQ
IRATASEVQNLLVSGRKKEALQCAQEGQLWGPALVLASQLGDQFYVDTVKQMALHQLVAG
SPLRTLCLLIAGQPAEVFYSDSTTKSSLPGAVNMPQQPAQIGANCMLDDWEENLAVITAN
RTKDDELVIIHLGDCLWKERSEITAAHICYLIAEANFEPYSDTARLCLIGADHWKLPRTY
VSPEAIQRTELYEYSKVLGNSQFILLPFQPYKLIYAHMLVEVGKVSDSLKYCQAVLKSLK
TGRAPEVETWKQLVLSLEERIRTHQQGGYSANSAPGKLVGKLLNFFDSTAHRVVGGLPPP
APTLQGGAPGNGHYNQPTGHRVSSSQSTMAMSSLMPSASMEPISDWMADGSRMTMANRSV
SEPDFGRTPRQDQVDSSKGTASPNEQGKASVSGGASRFPRFNFGSQLLQKTVGLVLRPRP
GKQAKLGETNKFYYDEKLKRWVEEGVEAPAEETALPPPPTTTAFQNGMSDYNLKSALQKE
GIPNNGSPEYKTPTPSEHSSGIPPIPSSSNQFSSRGRMGVRARYVDTFNQGGGKPANLFQ
SPSVPSVKPPVAPNAKLFIPTPASLGEQAMEAIAENGQEETSTNGDHTTSIANDSFRSPI
PSSSMTVQRFPSMDNIPYMGDLTNGNGNGNGSLPPHSRRTASWGGSHSTPFSPPKSAEIK
PLGEALGMPPSSFMPNEPSLMRMQNGGSFGDLHEVEL
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaatcctccatttcatgtggaggatcagacggacgaggattttttcgataaa
ttggtcgacgatgagttcgggcccaccactactaccgccggatcgaaccctaagttcagc
gaggaagttgatcctaagttcgctgagggaagcgattccgacgaggcgaaagcgtttggg
aatctgagcattagcgaggctgggaatcaattggatgagtcggttcgtggcggtggtggc
ggcagcagcgaagctgaaggtgaaggcggtggtgatagtagcggctttggtttgaaagga
acacaagaagaaaaggattgtgtgggtggcggtgcaggtgcagagtcgttgggtgctcac
gtggaagagagggattcgttggtttcggccaattcgattgggtgtgatagtgtagtagga
tccagcaatgatgggattggatccgaatttgcttcggatttgactgtgagcaagagcagt
ggatccggcgggtctggggttaaggagattgggtggaattcattccacgcagattcggcc
cctcaaaatgggagtcacgggtttggatcgtattcagattttttcagtgaattggatggt
aattccggtgatttcccggggaatgtcgttggaaatttgaatagtgaggcgaaaatggta
acgggcaatgaaggatttgcagctgatggtgtgaataattcagttaattatgtgaattat
caagagggtcagggtcagggtcaggtttatggtgcaacggtggatcaaagttcaaatgtg
caggatttgagtagtagtcagtattgggagaatgcctatccagggtggaagtatgacccg
aataccgggaactggtatcaagtggggggtgatgatggtagcacgaatgttcagaccagt
gagtggagtgctgttgctgatggacattcggagatttcttatacgcagcaaactgctcag
cctgttgtgggaactgcgactgatactggcatgactgggagcgtgtctaattggaatcag
gtttcacaagggaataacgggactgagagtgtatctaactggaaacaggtttcgcaagtg
aataacgggactgagagcgtgtctaactggaatcaggtttcacaagtgaataatggatac
ccagaacatatggtttttgatcctcagtatcctggttggtattatgacacaatcgcacaa
gaatggcgcgcattggatacttatacttcgtcgattcaatcaacagctcagacccctgat
cagcagcagcatcaaaacgggtttgtgtcaactggtagttttaatcagattaataatggt
ttatatggtgagtatgggcaggctgacaaatacaggtcacagggttttggtagccaaggc
caagatggaagctgggctggggcatatggtaataatcatcagcaggaattgaattcgtgg
caagctgaaactgttccaaggagtgagggtattacaactttgggtggaaaccagcatttt
gatagttcttatgtgaataatgatcaacagaagtccttcaattcttttggaccagtttca
tcttacaatagagcaagtcagagtcatggtgaggctaatgggaatgttgaatttaaaagc
tctgtccctggtgggaactttagtcagcagtttagtccggcaaatctgaagcttaatgag
caaacacaattctcgggtgattactttggcagtcaacctgtaaatttttcccagcaacca
tttgagagtgtccatcagacttcttatgcttccaatgttggaagatcatctgctgggcgt
cctccacatgccctggtgacgtttggctttggtggaaaactccttgtaatgaagaatagt
aatagttcactcagtagctcgtcatttggaagccaggatctggtaggaagctcactttct
gttctaaacttgatggaagttgtcttaggaaacgctgatgcttcaagccttggatcaggt
acctccgattattttcatgctttgtgccaacaatcatttcctggtccattggttggtggg
agtgttggaggtaaagagttgaacaaatggatcgacgagaggattacgagctgtgaatta
cccaacatggattatagaaaaggtgaagcattgaggttgcttctatctttgcttaagata
gcttgtcaacattatggaaaacttcgatctgcttttggtgctgacaccgttttgagggaa
aatgattctccagaatcagcagttgctaaactttttgcatctgctaagaggaacagcacg
caattcagtgagtatgatgctcttagccactgcttgcagaagttgccttctgaaggacaa
attcgggcaaccgcttctgaggtacaaaatcttctggtttctggtagaaagaaagaggct
ttgcaatgtgcacaagaaggtcaattgtgggggcccgcacttgttcttgcttcacaactt
ggtgatcagttctatgttgacactgtgaagcaaatggcacttcaccagctagttgcagga
tcacctctaaggactttatgcctgctaatcgcagggcaaccagctgaagtgttttattct
gattccacaaccaagagcagtcttccaggagctgttaatatgcctcaacagcctgcacag
attggggccaattgtatgctagatgactgggaggaaaatttggctgtaataactgcaaac
agaacaaaggatgatgaacttgtaattattcatcttggcgattgcctttggaaggaaaga
agtgagattactgctgcacacatctgctacttgattgcggaagcaaactttgagccatac
tcagacactgctaggctgtgtctaattggagcagatcactggaaacttcctcgaacctac
gttagtccagaagctattcagaggactgagttatatgaatattcgaaggtgcttggaaac
tctcagtttatcttgctaccttttcagccatacaagcttatttatgcacacatgctagtt
gaagtggggaaggtttcagactcattgaaatactgtcaagctgtattgaagtctctgaag
actggtcgagcacccgaagtagaaacatggaaacagttagtattatctcttgaagagagg
atcagaactcaccaacagggtggatacagtgcaaattcagctcctggaaaattagttggc
aaattgcttaacttttttgatagtacagcacatcgtgttgttgggggtcttccaccacct
gcaccaacattacaaggaggcgctcctggtaatggacattataatcagccaactggccac
agggtatcaagtagtcaatcaacgatggccatgtcatcgttaatgccttctgcatcgatg
gagcccataagtgattggatggctgatggtagtagaatgacaatggctaatagaagcgtt
tcagagccagattttggtagaactccaagacaggatcaggttgattcatcaaaaggaacg
gcttcaccaaatgaacaaggcaaagcttcagtctcagggggggcatcacgctttcctcgt
tttaattttggctcacagttactgcaaaagactgtggggctagttttaaggcctcgccct
ggcaaacaggctaaattgggtgaaacgaacaaattctattatgatgaaaagctgaagaga
tgggtagaggaaggcgttgaagccccagctgaagaaactgccttgccaccccctccaact
actacagccttccagaatggcatgtcagattacaatttgaaatctgcattacagaaagaa
gggattccaaacaatgggagcccggaatataaaactcctactccttcagaacattcttca
ggaattccacctattccatccagctcaaatcaattctcatctcgtggaaggatgggtgtt
cgggcaaggtatgtggacaccttcaaccaaggtggtggaaagcctgcaaacttgttccag
tcaccttctgttccatctgttaagcctcctgttgctcccaatgcaaaattattcattccc
accccagcatcacttggtgaacaggcaatggaggctatagcagaaaatgggcaagaagaa
acttcaactaatggagatcatacgacatccattgcaaatgactcattccggtctcctata
ccttcatcatcaatgaccgtgcagaggttcccaagcatggataacatcccatacatggga
gatttgacaaatggcaatggtaatggcaatggctccctccctcctcactcacggagaaca
gcctcatggggtggaagccacagcactccattcagtcctccaaaatcggctgaaataaaa
cctctaggggaggcattgggcatgcccccatcatcatttatgcctaatgagccttctttg
atgcgaatgcaaaacggtggcagttttggggaccttcatgaagtggaactttga
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