Castanea sativa (European chestnut): 142613349
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Entry
142613349 CDS
T11266
Name
(RefSeq) putative U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142613349
09123 Folding, sorting and degradation
03018 RNA degradation
142613349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142613349
03041 Spliceosome [BR:
csaa03041
]
142613349
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142613349
mRNA degradation factors
5'-3' decay
Lsm complex
142613349
Spliceosome [BR:
csaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142613349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
142613349
NCBI-ProteinID:
XP_075641778
LinkDB
All DBs
Position
10:complement(26811130..26814371)
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AA seq
150 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDD
GGAKGMGGGRGRGGSGGKAGGSRGAGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctacttaagagtgcccaagggcacccaatgttggtcgaactgaaa
aatggtgagacctacaacgggcatttggtcaattgtgatacttggatgaacattcatctc
cgggaagtcatctgcacctctaaagatggagataggttttggcgaatgcctgaatgctac
atccgtgggaatacaatcaagtatcttagagttcctgatgaggtgattgataaggttcag
gaagaaaccaagagccgttcagacaggaagccacctggtgttggtcgtggtcgaggacga
ggtagggaggatggtcctggtggacgccaaccgaaaggaattgggcgtggcttggatgat
ggaggtgctaagggtatgggtggaggccgaggtagaggtggatctggaggaaaggctggc
ggaagcagaggtgcagggcgtggtcgtggctga
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