Castanea sativa (European chestnut): 142613716
Help
Entry
142613716 CDS
T11266
Name
(RefSeq) small RNA degrading nuclease 1-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
142613716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csaa03009
]
142613716
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
Pre-60S particles
RNases
142613716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
SET_assoc
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
142613716
NCBI-ProteinID:
XP_075642299
LinkDB
All DBs
Position
10:9492203..9500012
Genome browser
AA seq
520 aa
AA seq
DB search
MEQLFDTAEKKVLVEMVKLAQKQGMKGTKGDWKEFLRVHDRKLGNSLSDPTRRSNDVLAA
FLKTFVEENHLKFFAKVMQCHLKRDVVGQFTNVSPDNEIPEQRLVRLTLEHPQYLLDYSF
PSNDEGWVITKLPKKSKVMRSNAMVAVDCEMALCEDGTEALVKVCAVDRNLQVKLDELVN
PNKVIADYRTDITGVSARDLEGVTCSLADVQKSMKKLLSKGAILVGHSLNNDLKALKLDH
ARVIDTSLIFMCLDGPIYRRASLNNLCKSVLGYEIRKKGAPHNCLDDASAAMKLVLAKIE
NGVDNAIPLVQEDVPNSEMAKLFLHRMPKNVPTEELHKIIPGDFTIELKPSKKMQEDKSS
LFVIFKNSQEAHQAYEKVKGSQEKDSWGRPQKLVKHMLTTGILVSFYVRKMANDDSLGQI
SSKRAFQDEEISGASKKLKTNQKTEEDSSNQCCDHSEEREGLKQELSKGEVADSDHCCDH
LKEIERLKQELSKRDFKIITQDKMIGDLKKRLNSKHVKRH
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattatttgacaccgcagagaaaaaggttcttgttgaaatggtgaagttggcc
caaaaacaaggaatgaagggtacgaaaggagattggaaggaattcttaagagttcatgat
aggaagcttgggaatagcttgagtgatcctaccaggagatccaatgatgttttggctgct
tttcttaagacttttgttgaagaaaatcatctcaagttttttgctaaagtaatgcaatgc
catttaaagcgtgatgtagtggggcaatttacaaacgtatctccagataatgaaatacct
gagcagagactggttcgtttaactcttgaacaccctcagtacctgctggattattcgttc
ccatcaaatgatgagggatgggtgattacaaagcttcctaaaaaatccaaggttatgaga
tcaaatgcaatggttgctgttgactgtgagatggctctctgtgaagatggcactgaagct
ttagtgaaagtttgtgctgtggatcgcaatttgcaggtgaaacttgatgaacttgtaaac
ccaaataaagtcattgcagattatagaactgatataactggggttagtgcaagagatttg
gaaggagttacttgttcattggcagatgtacagaaatccatgaagaagctattatcaaag
ggagcaattttagtaggccacagtttaaacaatgacctgaaagcactaaagttagatcat
gcaagagtaattgatacctcacttatctttatgtgtttggatggacctatctatagaaga
gcatctctgaataatttgtgcaagtctgtattgggctatgaaattcgaaagaagggtgct
ccacacaattgtttagatgatgcatctgctgcaatgaaacttgttcttgctaagatagag
aatggtgttgataatgctattcccttggttcaagaggatgtacctaattctgaaatggca
aagctatttctccacaggatgccaaaaaatgtgcctactgaagaattacataaaatcatt
cctggggactttacaattgagctcaagccatctaaaaagatgcaagaagataaatcttct
ttgtttgtcatctttaagaactcacaagaggcacatcaagcatatgaaaaagtcaaaggc
agccaagaaaaggattcgtggggacggccacagaaacttgtcaaacatatgctcaccaca
ggtatattagttagtttttatgtccgaaaaatggcaaatgatgattcccttggccaaata
tcatccaagagagctttccaagatgaggagatctcaggtgcatccaagaaactgaagacc
aatcaaaagactgaagaggactcttcaaatcagtgttgtgatcactcggaagagagagaa
ggattgaagcaagagctgagcaaaggggaggtggcagattcagatcactgttgtgatcat
ctgaaagagattgaaaggttaaagcaagaattgagcaaaagggattttaaaatcattacc
caggacaaaatgataggcgatcttaaaaagagattgaactctaaacatgttaaacgtcac
taa
DBGET
integrated database retrieval system
