Castanea sativa (European chestnut): 142613741
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Entry
142613741 CDS
T11266
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142613741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142613741
Spliceosome [BR:
csaa03041
]
Common components
Common spliceosomal components
SR proteins
142613741
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_YTH1
RRM_3
RRM_7
RRM_occluded
Nup35_RRM_2
F07F6_N
Motif
Other DBs
NCBI-GeneID:
142613741
NCBI-ProteinID:
XP_075642337
LinkDB
All DBs
Position
10:complement(25707261..25712625)
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AA seq
296 aa
AA seq
DB search
MSSRASRTLYVGNLPADIREREVEDLFYKFGRIAHIDLKVPPRPPGYAFVEFEDPQDAED
AIRNRDGYDFDGHRLRVELAHGGRGHSSSRDRYSSYSSGRSGRGGVSRRSEFRVLVSGLP
PSASWQDLKDHMRQAGDVCFSQVFRDGNGTTGIVDYANYEDMKYALKKLDDSEFRNAFSR
AYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRGRSLSKSPKTKPSRRSPVKSRSRS
ASRSRSASKPRSLSGSRSRSRSPLPSRPKRMSKSPKKRSPSRSPSRSRSRSKSLSR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgagtagccgtgcgagtcgaaccctctatgtgggtaatcttccagctgatattcgtgaa
agagaagtggaggatttgttttacaagtttggacgcatagctcacattgatctgaaggtc
ccgccaaggcccccgggttatgcatttgttgagtttgaagatcctcaagatgctgaagat
gctattcgcaaccgtgatggctatgattttgatgggcatcggctacgggtggaacttgca
catggtggccggggacattcatcatcaagagatcgctatagtagttatagcagtggtcgg
agtggacgtggtggagtatctaggcgctctgaatttcgtgttcttgttagtggattgcct
ccttctgcttcatggcaagaccttaaggatcacatgcgacaagctggggatgtttgtttt
tcccaagttttccgtgacggtaatggcacaacagggattgtggattatgcaaactatgaa
gacatgaagtatgcactaaaaaaacttgatgattctgagttccggaatgcattttctcgg
gcatatgttcgagttagggaatatgattcgaggagggattcctccaggagccccagtcgt
ggtcgatcttactcaagaggcaggagttacagccgtagtcgtagtcggggcaggagcctg
agcaagtctccaaaaaccaaaccttcgcgccgctcacctgtcaaatcacggtcgaggtct
gcttctcgctctcgctctgcttcaaagccgcgttctttgtctggatcacgatcaaggtcc
agatctccattgccttcgcgtccaaaacgtatgagtaaaagcccaaagaagcgcagtcca
agcaggagcccaagcaggagcaggagcaggagcaagagtttatccaggtaa
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