Castanea sativa (European chestnut): 142613779
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Entry
142613779 CDS
T11266
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csaa03009
]
142613779
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142613779
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
90S particles
Helicases
142613779
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
ResIII
AAA_RNF213_3
Motif
Other DBs
NCBI-GeneID:
142613779
NCBI-ProteinID:
XP_075642388
LinkDB
All DBs
Position
10:complement(26513794..26521040)
Genome browser
AA seq
1340 aa
AA seq
DB search
MEVSVENSPESNNRKRSWSLEGCDSNALILPDKKKTKKRKKVVVEKKPKLSNSQKRKLRK
LEEEKEKTLLLSKSIETLEKYKLPENAFPLLQSVQDIGQPETMKEKRRRAVQFSNAGLEV
PDSSQPLKRKGNDDDDDADAVGTGPEIDEISSGQDFSEDDSLQPMIVEREALKNASFSLE
SSQGPVYGGENSGSIVGLQAEEVFNKDNSTSMQKDGNLDSLRISCIDDGSESSRLMDKED
ESQKAKYRSTINLQGFPVQRPQIAPTVVHVSRPNEVQNTRKDLPIVMMEQEIMEAINDHA
SVIICGETGCGKTTQVPQFLYEAGFGSSELGGKSGIIGVTQPRRVAVLATAKRVAYELGL
HLGKEVGFQVRYDKKIGDSCSIKFMTDGILLREVQNDFLLKRYSVIILDEAHERSLNTDI
LIGMLSRIIRIRQHEYEKQQQIVHSGQNVSPENMIYPLKLVLMSATLRVEDFISGRRIFH
DPPPVIEVPTRQFPVTIHFSKRTEIVDYIGQAYKKVLAIHKRLPQGGILVFVTGQREVNH
LCQELRKASKKLIMKNLRGDAENDCTAVSDINFVEDMNMKDISEAFEVDGNSVHQYSDRF
SSYEEDECDIEEDHSDDSYDSETESELEFDVDDGEASHQTIQDGDHSLVDILGEDASLAS
LKAAFESLAGKTALNSVSDSKQALPVSPEGCLDQSTCTGKKKGGDNGFCAGALSVLPLYA
KLSAADQLRVFKDVKEGERLVVVATNVAETSITIPGVKYVVDTGREKVKIYNTANGMETY
DIQWISKASAAQRAGRAGRTGPGHCYRLYSSAVFTNTLPDFSLAQISKMPVDGVVLLMKS
MGIDKVQNFPFPTPPNTKALVEAEHCLKALEALDKNGKLTPLGKAMARFPMSPRHSRMLL
TVIQTMRMVKSYARANLILGYAVAAAAALSLSNPFVMELEGRHTNKDDIEQDEKSGTLDS
EKVIDKQEKLRRKKLKEISKVSRAKFSNPSSDALTIAHALQCFELSGSPVEFCNDNALHL
KSMEEMSNLRRQLLQLVFEKGLCGTEQDFSWIHGTPEDIEHAWRVSFNKPPLLLNEEELL
GQAICAGWADRVAKRIRVSRPSEGDQKAHAVRYQSCMVKETVFLHHWSSVSSSPPEFLVY
SELIQTKRPYMHGVTSVKSEWLVKHAQFLCTFSQALTDPKPYYEPHTDKVFCYVIPTFGP
HLWELPLHSLPITDNVQRVAVFAYALLEGKVLPCIRSVRKFMASPPSCILRPEASGQKRV
GNLLNKLKTKLIDSCAMLREAWIENPMELHSEILGWFQESFHNHFEVLWSQMHTEVLLEP
EERFPKSRRVKRKKYHYLLL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtctgttgaaaattcgccagaatcgaataatagaaaacgttcatggagtttg
gaaggttgcgatagcaatgcattaatcttgccggataagaaaaagactaaaaagcgcaaa
aaggttgtagtggaaaagaaaccgaagctgagcaactctcagaagagaaagctaaggaag
ttggaggaggagaaggagaaaacacttctgctgtcaaaaagcatcgagaccttagagaag
tacaagcttccggagaacgcgtttccccttttgcagtctgtacaagatattggtcagcct
gaaaccatgaaggaaaaacgtaggagggctgtacaattttctaatgctggattagaagtt
ccagacagcagccagccactcaagaggaagggtaatgatgatgatgatgatgctgatgct
gttggaactggacccgagatagatgaaatttcatcagggcaggatttcagtgaggatgac
tcattgcaaccaatgatagtggaaagagaagccctaaagaatgcgtctttttctttggaa
tcatctcaagggccagtttatggcggtgaaaatagtggatccattgttggcttacaagct
gaagaagtttttaacaaagacaacagcacttctatgcaaaaagacggaaatctagattct
ttgcgcatttcatgcatagatgatggcagtgaaagctctaggttaatggataaggaagat
gagagccaaaaggccaagtacagaagtacaatcaatctacaaggttttcctgtgcagaga
cctcaaattgccccaactgtagtgcacgtttctaggcccaatgaggttcagaacactagg
aaggatcttccaatagtcatgatggagcaggagataatggaagctataaatgatcatgcc
tctgttatcatatgtggagagactgggtgtggtaaaaccactcaagttccacagtttctt
tatgaagctggctttggttcaagcgagttgggtggtaaaagtggtattattggagttact
caaccacgtcgtgttgctgtccttgccacagccaagcgagtggcatatgagcttggtctc
catctcggtaaagaggttgggtttcaagttaggtatgacaagaagattggagacagttgc
tcgatcaagttcatgacagatggaattttactacgagaagttcagaatgattttttgttg
aagcgttattctgtcataattcttgatgaggctcatgagagaagcttgaacacagacatt
ctaattggaatgctttcacgtataattagaatccgtcagcatgaatatgagaagcagcaa
cagattgtccattcagggcaaaatgtaagtccggaaaatatgatttatccattaaaactt
gtgctgatgagtgccaccttgcgagtggaagactttatttctgggagaagaatatttcat
gatcctccacctgttatagaagttcccactagacagtttccagtaactatacacttttca
aagagaacagagattgtggattatattggccaagcatataaaaaggtcttggcaattcac
aagaggttgccacaggggggcatacttgtattcgttactggccagcgggaagtcaatcac
ttgtgtcaggagctacgtaaagcttcaaagaagctgattatgaaaaatttgaggggggat
gcagaaaatgattgcactgcagtctctgacataaattttgttgaggacatgaatatgaag
gatattagtgaagcatttgaagttgatggaaattcagttcaccagtattctgacaggttt
agctcttatgaggaagatgagtgtgatatagaggaggatcattctgatgattcatatgat
tcggaaactgagagtgaactggaatttgatgttgatgatggggaagcatcacatcagaca
attcaagacggtgatcatagccttgtagacattttaggggaggatgcaagccttgcttcg
ctaaaggctgcttttgaatctttggctggaaaaactgcattaaactctgtctctgatagc
aaacaggctcttcctgttagtccagaaggatgcttagaccaatccacttgcacagggaag
aaaaagggaggagacaatggtttctgtgctggtgcattgagtgttctgcctctttatgcc
aagctgtctgctgcagaccagcttcgtgtttttaaagatgtcaaggaaggagagaggctt
gttgttgttgccacaaatgtggctgaaacctctattaccatcccaggtgtaaaatatgtg
gttgatactggaagagaaaaagtgaagatctacaatactgccaatggcatggaaacatat
gatatacagtggataagcaaggcatctgctgctcaacgtgcaggaagagctggaagaact
gggcctggccactgttaccgtctctactcttctgcagtttttaccaatacacttcctgac
ttttctcttgctcaaatatctaaaatgcctgttgacggtgtcgtccttcttatgaaatcc
atgggtattgataaggttcaaaactttccgtttccaactcctcccaataccaaagcattg
gttgaagcagagcattgcttgaaggctcttgaagcacttgataaaaatggaaaattgaca
cccttagggaaggccatggctcgttttcccatgagtccacgccactccaggatgctcctt
actgttattcaaactatgaggatggtgaaaagttatgcccgtgcaaatttgattctagga
tatgcagttgcagcagctgcagctttgagtttgtcaaatccatttgtcatggagcttgaa
ggaagacacactaataaagatgacatagagcaggatgagaaatccggtaccctagatagt
gagaaagtcattgacaagcaagaaaaattgaggagaaagaaactgaaagaaatttcgaaa
gtgtcgcgtgcaaaattttccaaccctagcagtgatgctctgaccatagcacatgctttg
cagtgttttgagctttctggaagcccggtggaattctgcaatgacaatgcattacacctg
aaaagcatggaggaaatgtccaatctgcgaaggcagctacttcaactggtctttgaaaaa
ggcctttgtggcaccgagcaggatttctcatggattcatggaactccagaggacatagag
catgcttggagggtttccttcaataaaccccctctcttactgaatgaggaagagctctta
ggccaagctatctgtgctggatgggcagatagggttgccaaacgcattcgagtttcaaga
ccgtctgaaggggaccaaaaggcacatgctgttcggtatcaatcttgtatggtaaaagaa
actgtcttcctgcatcattggtcatctgtttctagttcgccccctgagttcttggtttac
agtgaattgatacagacaaaacgaccatacatgcacggtgtgactagtgtaaaatcagag
tggcttgttaaacatgctcagtttttgtgcaccttctcccaggctcttacagatcccaag
ccttattatgagcctcatactgacaaagtattctgttacgtcattcctacttttgggcct
catttatgggaacttcccttgcatagtttgccgatcacagataatgtgcaacgagttgca
gtgtttgcttatgcattgcttgaaggcaaagtattaccatgcataagatctgttcgtaag
tttatggcatcccctcctagttgcattttgaggccagaggcatcaggtcaaaaaagggta
ggaaatcttttaaacaagttaaagaccaaattaattgatagctgtgctatgttaagagag
gcttggatagagaatcctatggaattgcattcagaaattctgggctggtttcaggagagt
ttccacaatcattttgaagtgctttggtcacaaatgcacactgaagttcttttagagcct
gaagaacgctttcccaaaagtagaagagttaaaagaaagaagtatcattatttattgttg
tag
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