Castanea sativa (European chestnut): 142613791
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Entry
142613791 CDS
T11266
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03430
Mismatch repair
csaa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
142613791
03460 Fanconi anemia pathway
142613791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csaa03400
]
142613791
DNA repair and recombination proteins [BR:
csaa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
142613791
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
142613791
NCBI-ProteinID:
XP_075642408
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Position
10:complement(26816424..26825804)
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AA seq
921 aa
AA seq
DB search
MEAADSPSPTAIKPINKGVVHRICAGQVIIDLSSAVKELVENSLDAGATSVEISLKDYGQ
DFFQVIDNGCGISPSNFKVLALKHHTSKLLDFPDLQSLTTFGFRGEALSSLCALGNLTVE
TRTKNESVATHLTYDHSGLLVAEKKTARQIGTTVTVKKLFSNLPVRSKEFSRNIRKEYGK
LISLLNAYALIAKGVRLVCANTTGKNAKSVVLKTQGTGSLKDNIITVFGMNIFNCLEPMN
IFISDSCKVDGFLSRFGHGSGRNLGDRQYFFVNGRPVDMPKVGKLVNELYKGANSRQYPI
AIMNFTVPTRECDVNVTPDKRKIFFSDESSILSALREGLQKIYSPSYAFYPVNKVEECTK
EADCSELCSPREKSHMLKQLSPDGSDLEVIEEHVTEDGIHLKTVENAQQLVHDQEGSIHT
NNGKFMEKDFTLRVHGTKKADSSRKLTGHLHSVTTDQIASSPSRADGNGIAANTDSCGRS
SYVQSSLNKFVTVNKRKHERISTTLSELPILRNQTLSCHLKNDDSERHAAVSRSPASHDL
VDNTAVVNKNEPSKYLRADTILNKFRIPLSSGGNPKDGEPGKEPEGQEKAAPSSNMAPIA
SSSKDLENKLQDPSVASPSRSSTSILDAPKSPADLELCSTLQFSFQELKTKRQQRLSILQ
SSGHKDGRAKMKRCYDAATLELSQPDNEERKAKALAAATKELEKLFRKEDFGRMKVIGQF
NLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTIFNQQPLLRPLGLELSTEEEVVASMH
IDVIRKNGFTLEEDPHAPPGQRFKLKAVPFSKNITFGIEDVKDLISTLADSEGECSMIGS
YKMDTFDSVCPSRVRAMLASRACRSSIMIGDALDRNEMQKILKHLADLKSPWNCPHGRPT
MRHLTDLTSIHKRSEGKNVDC
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagccgattctccatccccaaccgctatcaaacccataaacaaaggtgtggtt
cacagaatttgcgcaggccaagtgatcattgacctctcgtcggccgtgaaggaactcgtc
gagaacagcctcgacgccggcgccaccagcgtcgagatctctctcaaagactacggccag
gacttcttccaggttatcgacaatggctgcggcatttcccccagtaacttcaaggttctt
gcacttaagcatcatacgtcgaaattattggattttcctgatctccagtcactgaccaca
tttggcttcagaggggaggcattgagttcactttgtgctttggggaatctgactgttgag
actaggacaaagaatgagtcagttgctacacatttaacttatgaccattcaggtttactg
gtagctgaaaagaaaacagcacgccaaattggtaccacggtcactgttaagaagttgttc
tccaatttacctgtgagaagcaaagaatttagtcgcaacattcgcaaggaatatggaaag
cttatttcgttattgaatgcctatgccttaattgcaaaaggagttcggttagtctgcgcc
aacacaactgggaaaaatgcgaagtctgtggtacttaaaacacaaggaactggttctctt
aaagataacatcattacagtgtttggcatgaacatcttcaactgcttagagcctatgaat
atatttatatcagacagttgcaaagttgatggcttcctttccaggtttggacatggtagt
ggacgcaacttgggagacagacaatacttttttgttaatggtcgaccagtggatatgcct
aaagttggcaagctggtgaatgaattatataaaggtgcaaactcccggcaatatccgatt
gcaatcatgaacttcactgttccaacaagagaatgtgatgttaatgtaactcctgataaa
aggaaaatatttttttctgatgaaagctccatattgtctgccctaagggagggtttacag
aagatatattccccaagttatgctttttatcctgttaataaagttgaggagtgcactaag
gaagcagattgctctgaattgtgctctccacgtgagaaatctcatatgttgaaacaatta
tctccagatggcagtgatctagaagttattgaggagcatgttacagaggatggaattcat
ctcaaaacagttgaaaatgctcagcagctagtgcatgatcaagaaggatcaatccacacc
aataatggcaaattcatggagaaagatttcactcttagagtacatggcactaaaaaggct
gacagcagtaggaaattgactggtcacctccatagtgttacaactgatcaaattgcttcc
tccccttcacgagcggatgggaatggaattgctgctaatacagattcatgtggtcgttca
agctatgtccaatcatcgcttaacaaatttgtaactgtcaataaaagaaagcatgaaaga
attagtacaacactatctgaactgcctatccttagaaatcaaaccctttcttgtcatttg
aagaatgatgattctgaaaggcatgctgctgtttcaagatccccagcgagtcatgacctg
gttgataatactgctgtggtgaacaagaatgagccttccaagtatcttagagcagatacg
attttaaataaatttagaattccactttcttctggaggcaatcctaaagatggagaacct
ggaaaggaaccagagggtcaagagaaagcagccccttcttctaacatggcaccaattgcg
tcttctagcaaggatctcgaaaataaattacaagatccttctgttgcgtctccttcacgt
tcttctacatccatattagatgctccaaagtcacctgctgatctagagttgtgttccacc
ctgcaatttagttttcaagagttgaagacaaagcggcagcagaggctgtctattttacaa
tctagtggtcataaagatggaagagcaaagatgaaaaggtgctatgacgctgcaactctg
gagctttctcaacctgataatgaggaacgaaaggcaaaggctttagctgcagctactaaa
gagttggaaaaactattcagaaaggaggactttggcagaatgaaggtgattgggcaattt
aaccttggttttataattgggaagttggatcaagatttatttatcgtggatcagcatgct
gctgatgagaaatacaattttgagcgtctttctcaatcaaccatttttaaccaacagcct
ttgctccggccattggggttggagttatctactgaagaagaggtggttgcttcaatgcac
attgacgtaattaggaaaaatggcttcactctggaagaggatccacatgctccacctggg
cagcgttttaaattgaaagctgtccccttcagtaaaaacattacttttggaatcgaagat
gtcaaggacctgatttctactctagctgatagtgaaggggaatgctcaatgattgggagt
tacaaaatggatacttttgactctgtttgcccaagcagagttcgtgcaatgctggcatca
cgtgcgtgcagatcatctattatgattggagatgcacttgacagaaatgagatgcagaag
atactcaagcatttggcagacctgaaatctccttggaattgcccgcatggtaggccaacc
atgcgtcatttgactgacctgacatccattcacaaaagatcagaaggaaaaaatgtggac
tgttaa
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