Castanea sativa (European chestnut): 142614997
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Entry
142614997 CDS
T11266
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142614997
03036 Chromosome and associated proteins [BR:
csaa03036
]
142614997
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
142614997
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
142614997
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HHH_9
Spt6_S1
Tex_central_region
SPT6_acidic
HTH_44
S1
Tex_YqgF
Tex_N
EBNA2_Core
ATF7IP_BD
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
142614997
NCBI-ProteinID:
XP_075643758
LinkDB
All DBs
Position
11:complement(56676647..56688584)
Genome browser
AA seq
2017 aa
AA seq
DB search
MLDDDDLELIRENENLGKLQSEKGGAKFKRLKKAGVDTELEGPSGISDDDGPLFSDVAEE
DEYVPDDEEDEMANFIVDHGKFYGKGAPISSTYKSLSGQRNSNKKKSRHASKASSAVGEA
SYTFSNADEVLNLHEEVLAESARPDNSDDFAPFILKDKYMTEKDASVKETDVPERMQIFG
EIIGPAPVDEMSIIEESSCILGQLGTYMYPLFCKMPEQAEGFDLCKRIRKEEIMSFLKLH
HLEKCDIPFITMYRKEQCLSLLKDPEQDEESRGKVDAERTPKLKWHKVLWAIKELDKKWL
HLQKRKSALKRYYNKRYEEECCNIVSGARLAFNKELFETTIKSLKKAESERDIDDVDMQF
SLHFPPTEGGNGGKYKRPAKKSQYSYCNKAGLWELAHKFGDSKQFGFQITLERTGFKFDE
DPEEFPEEIASNFMCEMFETPEAVLKGARHMAAVDISCETLFRKHARSIFMDRALVSTSP
TPKGNKEIDCFHQYAGVKWLHNKPLSKFEDMQWLLIQKVEEEKLLEITIKLPESALDELI
SASRDVYLRDNDNRSAQIWNEQRKIILEDAIKNFLLPSMEKEARALLTTQAKNWLLIEYG
KQFWNRVSVAPYHCKENVVNENKGIAPRVMACCWGPGKPETTFVMLDSSGEVLDVLHAGS
ITKRSQNVIHQQQRKNDQQHVLKFMKNYRPHVIVLGAANVACTRLKDDIKEIIFKMVEEN
TGDISQVMDEISIVYGDESFAHIYEHSQISSEQLPGQPGIVKRAVALGRYLQNPLAMIAT
LCGAQREIVSWKLSSLDHYLTGDEKWEMIEWVMVDVTNQVGLDLNLAAKHAWLFAPLQFV
SGLGPRKAASLQRHLLGGKEIRNRRDLISCGLRGKNDFYNAVGFLRVCCSELHYTGKDTN
LLDNTRIHPESYSLAEDLAKAVHKFHIQDDANNADSMEEPVQYINDNPQLLKSFDITDYS
EKYEIEMGENRIETLYDIKMELLHGFRDPRRPYEEPTQDEEFDMVSGKNGNALAEGRIVQ
ATVRNLQSHRAFCVLDSGLTGVLVEEDFSDNADDISLAEKLHVGDILTCKIKQVEKDKFQ
VCLTCKESELKSNGDQNSSEADPYYCGGQSSLRSKQGKAHNGELAKKPFNPRMIVHPHFQ
NLTLNQAMEFLSNKDAGECIFRPSARGPSYLTLTLKICDGLFVHKDITEGGKDHSNITNL
LRLGKTLKIGDDYFKDIDEVVDRYVDPLVTHLKTMVSFRKFKRGSKAEVDKVLRVEKSEY
PTRIVYCFGISYEHPGTFILSYIKTTHLRHEFVGLHPKGFKFRKQMFGKIEQLVAYFQKH
IDDLQHESAPMQKSAFGGSSVKTSVRGSNDGGWQSQPKSGLESTPFPRDTNDYGDDVGDG
GQGLGHGFGRGRGCGRGRGRGRGRNDSSHENKDSGYDTYSKLDFGSKNGDGGDGGWSTFH
SEKVQNSPSRWDSDCTNTNGGNWGGVGDGTGSWSGGARDNNNKTFFGGLGSGGTDGVGGK
SWGPSGTGGWGDSTSSKGGGAGGATWGGSKGAESNSGGNQGGNNGRGHGSASENKNNTFF
GELRSGGTDGVGGTSWGPSGGTGGWGGSSKGGGAGGWGDSSKGGGASGVIWGGSKGVESN
SGGNQGVKNGCGHGDVSENNNNTFFGELGSGGTSWGPSGSTGGWGDSSKGGGAGGVTWGG
SKGSESNTGGNQGGNNGWSHGGSDGGWSNSPGAKIKNPPRKWDNDRTNASGGNWGGGGDG
TGGWSGGGSASFGNWDNNGEGEHTSNYKMGRSNDHGYGRGQGHGPNRGRGRGQGRGRGRD
SYNIGDEDSSHSGGTNTGGWSGGGSANFDNWDNNGEGGHTSRYNMGCSNDHGYGQGRGHG
PNHGQGHGEGYGRGRGQGRGRGRGRDSYDSGDDDNNHTSFSELGSGGTDSAGGTSWGPSG
GTGGWGDSGKGRGAGGGSWEHSGSTGGWGDSSKGRGAGGGSWERSGSTGGWGDSSKGRGA
GGGTWGGSWGAESNSGGSNGHGRGSGGDWSRNASSGW
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatgacgacgatcttgagttgattcgagagaatgaaaacctgggcaagcttcag
tcagagaagggaggtgcaaagtttaagcggctcaaaaaggctggggttgacactgaactg
gaagggccctctggcatttcagatgacgatggaccactatttagtgatgttgctgaagaa
gatgaatacgtgcctgatgatgaagaggatgaaatggcaaattttatagtagatcatgga
aaattttatgggaagggagcccccataagttctacttacaaatctctttctggccaaaga
aattcgaataaaaagaagtcaaggcatgcatcaaaagcttcatctgcagtaggggaagct
agttacacttttagcaatgctgatgaagtactgaatcttcatgaagaagttctagctgag
agtgccagacctgataattctgatgattttgcacctttcatcctcaaagacaagtacatg
acagagaaggatgctagtgtaaaggagactgacgtgcccgagaggatgcagatatttggg
gaaatcattgggcctgctccagttgacgaaatgagcattatagaggagagttcttgcata
cttggtcaacttgggacgtatatgtatccattgttctgcaagatgccggaacaagctgaa
ggatttgatctatgtaaaagaattcgtaaggaagaaattatgagctttctgaaattgcat
catttggagaagtgtgatattccgtttatcactatgtatcggaaggagcagtgcctgagt
ctcttgaaggacccagagcaagatgaagaaagcagaggtaaggttgatgccgagagaacg
cctaaactgaagtggcacaaggttctttgggccatcaaggagcttgacaaaaagtggtta
catcttcagaagcggaagagtgctcttaagaggtactataacaagcgctatgaagaggaa
tgttgcaatattgtcagtggggcaaggcttgcctttaataaggagctctttgaaaccacc
atcaagtctctgaagaaggctgaatctgagagagatattgatgatgtggacatgcagttt
agcttacattttcctccaactgaggggggcaatggtggaaaatataagaggcctgcaaag
aaatcacaatatagctactgcaataaggctggcctgtgggagcttgcacacaagtttggt
gactccaagcaatttggcttccaaataactttagagagaactggatttaagtttgatgag
gatcctgaggaatttccagaggagatagcttcaaattttatgtgtgaaatgtttgaaact
cctgaagcagtgctcaaaggtgctaggcacatggccgcagtggatatcagctgtgagaca
ttgtttaggaaacatgcccgtagtattttcatggatagagctttagtctcaacaagccct
accccaaaaggaaacaaggaaatagattgttttcatcagtatgcaggggtcaagtggcta
cacaacaaaccactctcaaaatttgaagacatgcagtggcttcttattcagaaggtagaa
gaagagaagctccttgaaattaccataaagttgccagagagtgccctggatgagttgatt
agtgcatcccgtgatgtttatcttagagacaatgataatagatctgctcaaatttggaac
gaacagcgcaagataattctagaggatgcaattaaaaattttcttcttccttctatggag
aaggaagcaagagctctgttgaccacccaagcaaaaaactggttacttatagaatatggg
aagcagttctggaacagggtctctgtggcgccatatcattgtaaggaaaatgttgttaac
gagaataaaggtattgcaccaagggtaatggcctgttgttggggtccgggaaagccagaa
actacatttgtaatgttggattcttcaggagaagtgcttgatgtgttgcatgctgggtca
attactaaacggtcacaaaatgttattcaccagcaacagaggaagaatgaccaacagcat
gttcttaagttcatgaaaaattatcgtccacatgtcattgtcttaggtgctgctaatgtg
gcttgcacacggttgaaggatgatatcaaagagatcatttttaaaatggtagaggagaat
actggagatatcagccaagttatggatgagatcagcattgtttatggggatgaatccttt
gcccatatttatgaacattcacagatttcctcagaacagctgcctggacaaccaggcatt
gtaaagcgtgctgtggctctcggtcgttacctccaaaacccgttggctatgattgcaaca
ttgtgtggggcccaaagagagatagtatcttggaaacttagctctttggatcactatctt
acaggtgatgagaagtgggagatgatagaatgggttatggtggatgttactaaccaggta
ggtctagacttgaacttggctgcaaagcatgcctggctttttgcgcctttgcaattcgtt
tctgggcttggacctagaaaggcggcttcattacagaggcatttacttggaggtaaagaa
attagaaatcgaagagacttaattagttgtggactgagaggaaagaacgatttctataat
gcagttggttttttacgagtttgttgcagtgaactgcattatactggcaaagatactaat
ctgttggataatacaagaattcaccctgagtcatatagtcttgcagaggatttggcaaag
gcagttcataaatttcatattcaggatgatgcaaataatgcagattccatggaagagcct
gtacagtacattaatgacaatccacaactgctaaaaagttttgatattactgattattca
gaaaaatatgaaatagaaatgggagaaaacagaatagagactctctatgatattaaaatg
gaacttcttcatggatttcgagatcctcgaaggccttatgaagaaccaactcaggatgag
gaatttgatatggtatctggaaaaaatgggaatgcacttgctgaaggaagaatagtccag
gcaacagttcgcaatttgcaatctcatcgagcattctgtgtgcttgactcaggcttgact
ggggtacttgtagaggaagacttttcagataatgctgatgacatttctttagcagaaaag
ctgcatgtaggtgatattcttacctgcaagatcaaacaagtagaaaaagacaaattccag
gtgtgtctgacttgtaaagaaagtgaattaaagagtaatggagaccaaaactcttctgaa
gcagacccttattactgtggaggacagagcagtttacgaagtaagcaggggaaagcccac
aatggggagctagcaaagaagcctttcaacccaaggatgattgttcatcctcattttcag
aatctaactttgaatcaagcaatggagttcctctcaaataaggatgctggagaatgtatt
tttcgccctagtgccagaggtccatcttatcttactttaacattgaaaatctgtgatgga
ctttttgtgcacaaagacatcaccgaagggggaaaggatcacagcaatattacaaacttg
cttcgtcttggaaagacattaaaaataggggatgattactttaaggatattgatgaggtt
gtggatcgttatgtagacccactggtaacccacctgaaaacaatggttagtttccgaaaa
ttcaagaggggttcgaaagcagaggttgataaagtgttgagagtagaaaaatcagaatat
ccaactagaattgtttactgttttggaatttcttatgagcatcctggaactttcatcttg
tcttatataaaaaccacacatctacgtcatgagtttgttggtctgcatcccaagggattc
aagtttaggaagcaaatgtttgggaagattgagcaattggtggcatatttccagaagcat
attgatgatttgcagcatgagtcagcaccaatgcaaaaatctgcatttgggggttcttct
gtaaagactagtgttaggggaagcaatgatggtggttggcaaagccagccaaaatcaggc
ttagaatctaccccttttccaagagatacaaatgactatggagatgatgttggagatggt
ggccaaggccttggtcatggatttgggcgtgggcgtggttgtggtcgtggtcgtggtcgt
ggtcgtgggcgtaatgacagcagccatgaaaataaagattctggttatgatacatactca
aagttggactttggttcgaagaatggagatgggggtgatggcggatggagcacttttcat
agtgaaaaagttcagaattcacccagcagatgggatagtgattgtactaatactaatgga
ggaaattgggggggtgtaggtgatggtacaggtagttggagtgggggtgcaagggataac
aacaataagactttctttggtgggttgggcagtggtggaactgatggtgttggtggaaaa
agttggggacctagtggtacaggtggttggggtgatagcactagcagtaagggtggaggt
gcaggtggtgccacttggggtggcagcaagggagctgagagtaatagtggtggaaatcaa
ggtggcaataatggacgtggccatgggagtgcaagtgagaacaaaaataatacttttttt
ggtgagttgcgcagtggtggaactgatggtgttggtggaacaagttggggacctagtggt
ggtacaggtggttggggtggtagcagtaagggtggaggtgcaggtggttggggtgatagc
agtaagggtggaggtgcaagtggtgtcatttggggtggcagcaagggagttgagagtaat
agtggtggcaatcaaggtgttaagaatggatgtggccatggggatgtaagtgagaacaac
aataatactttttttggtgagttgggcagtggtggaacaagttggggacctagtggtagt
acaggtggttggggtgatagcagtaagggtggaggtgcaggtggtgtcacttggggtggc
agcaagggatctgagagtaatactggtggcaatcaaggtggcaataatggatggagccat
ggaggtagtgatggtggatggagcaattctcctggtgccaaaattaaaaatccacctaga
aaatgggataatgatcgtactaatgctagtggtggaaattggggtggtggtggtgatgga
actggtggttggagtgggggtgggagtgctagttttggcaattgggataacaatggggaa
ggtgagcatactagtaattacaaaatgggtcgctccaatgaccatggttatggacgagga
caaggacatggtcctaatcgtggtcgaggtcgtggtcaaggtcgtggacgtggacgtgac
tcttataacataggggatgaggacagcagtcatagtggtggaactaatactggtgggtgg
agtgggggtgggagtgccaattttgacaattgggataacaatggggaaggtgggcatact
agtcgttacaatatgggttgctccaatgaccatggttacggacaaggacgaggacatggt
cctaatcatggtcaaggtcatggtgaaggttatggacgaggccgtggccaaggtcgtggg
cgtggacgtggacgtgactcttatgacagtggggatgatgacaacaatcatacttccttt
agtgagttgggcagtggtggaactgatagtgctggtggaacaagttggggacctagtggt
ggtacaggtggttggggtgatagcggtaagggtagaggtgcaggtggaggtagttgggaa
cacagcggtagtacaggtggttggggtgatagcagtaagggtagaggtgcaggtggagga
agttgggaacgcagcggaagtacaggtggttggggtgatagcagtaagggtagaggtgca
ggtggtggcacctggggtggcagttggggagctgagagtaacagtggcggcagcaatgga
catggtcgtggatctgggggtgactggagtagaaatgccagcagtggctggtga
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integrated database retrieval system
