Castanea sativa (European chestnut): 142615572
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Entry
142615572 CDS
T11266
Name
(RefSeq) putative RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142615572
03036 Chromosome and associated proteins [BR:
csaa03036
]
142615572
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
142615572
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142615572
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
142615572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
142615572
NCBI-ProteinID:
XP_075644425
LinkDB
All DBs
Position
11:complement(11443231..11450917)
Genome browser
AA seq
815 aa
AA seq
DB search
MSWLILKIFPCILCFMKSFLRKLFLGSRSSSSPSAGNNDLVYEPPPESHPSASSSYPIEV
VVDSVTVKPPHVQSPSQRTDQVSQNSKESGPLLPIVSSKQPTLSCTPPRYPSSSNIPESS
LISSSVKVKPQHVQSSSQSITNEVSHSSKVSSPVPLTISSRRLQSPSKPSPSSSNIPQSS
LTSSSVTVKPQHVQSSSQSITNEVSHSSKVSSPVPPTISSTPLQSPSKPSTSSYNLLLYH
LSQLPPTFSSIQPADSSNLSQSSSKPPPLSSSPSPSSLKTPVDSSKSYAYFPKTTEPPSA
SSSPTSYKPPQSSPSVVPYSFKPTPSSSGPPLYSTKQPPVFKPILHTAPNNVTNEGSKTT
YVCEKGAPIYAIPEDIKGHIERDIAPQVLKQSLSPSTYKAYFAALLYAEDYYLEKWSDFQ
LEKVTLKSEDAVLLKSKKSKYSNGSCEEDEKNFVEFEVDSIPVKRPFLLSRDVVRARPSD
KEVEPFQGFVHRVVKSRRVLVEFGDDFHSQHHPNRKYDISFSFNRVCLKRAHQAIEAALG
PSSNNFLFPECVPRKNILNPPALLDTYDELNTDEFNAVRRILSLQGSPPYLLGGPLIGTD
WQRYLPEEKASTRTGVVVCKAVIEIYKTSKENRILICAPTNRTCDMLMRSLRVREVIQES
DMFRANAAFREIDGVPIDILRSCPVKDECFACPPLHKLQKFRIILSTFVSSFRLHNQGIA
AGHFSHIFLVDASSTTEPEATIALANFADENTSVIVTGKPGNRSRWVRSDMARKYGLRKS
YFERLCEVGPYQILNPMFITELVGFEQWSKDIYEY
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggcttattcttaaaatcttcccatgcatcctttgtttcatgaaatctttcctt
agaaaactatttctggggtctcgttctagtagtagcccttctgctgggaacaatgattta
gtatacgaaccacctccggagtcacatccaagtgcttcttcatcttatccaatcgaagtt
gtagtagattcagtgactgtcaaaccaccacatgttcagagtccatcccaaaggactgac
caagtttctcagaattcaaaagaatcaggtccattgctacctatagtctcttctaaacaa
cccacattgtcttgtacaccacctcgatatccatcttcctcaaacatacctgaatcttca
ttgataagcagctcagtgaaagtcaagccacaacatgttcagagttcttcccaaagcata
actaatgaagtttctcacagttctaaagtttcaagtccagtcccacttacaatttcttct
agacgacttcaatctccatctaaaccatctccatcttcctcaaacataccccaatcttca
ttgacaagcagctcagtgacagtcaagccacaacatgttcagagttcttcccaaagcata
actaatgaagtttctcacagttctaaagtttcaagtccagtcccacctacaatttcttct
acaccacttcaatctccatctaaaccatctacatcatcctataaccttttgctttaccat
ctatctcaattgccacctacattttcctctatacaacctgcagattcctcaaacctatcc
caatcttcatcaaaaccacctcccttgtcttctagtccatctccatcatcccttaaaact
ccagttgattcttccaaatcatatgcatatttccccaagaccactgaacccccatcagca
tcttcttctccaacttcctataaaccacctcaatcttcaccttcagtggtcccatattca
ttcaagccaactccttcttcctctgggccacctctgtattccactaagcaaccaccagtt
tttaagccaattctgcatacagctcccaataatgtaacaaatgaaggaagcaagacgact
tatgtgtgtgaaaagggtgcacccatatatgctattcctgaggatatcaaaggtcacatc
gagagagacattgcacctcaagttctgaagcagtctttatctccttcaacttataaggct
tattttgctgctctgttatatgctgaggattactacttggagaaatggagtgacttccaa
ttggagaaagtgacattgaagtcggaggatgcagtacttttaaaatcaaaaaagtcaaaa
tattctaatggaagttgtgaggaggatgaaaaaaactttgtagaatttgaggttgattct
attcctgtgaagcggcctttccttttatcaagggacgtggtccgtgcacgaccttcggat
aaagaggttgagccatttcagggctttgtccatcgtgtggtgaaaagcaggcgtgtatta
gttgaatttggagatgattttcattcacagcatcatccaaatcgcaaatatgacatcagc
ttctcattcaacagagtttgtctaaaaagggctcatcaagcaattgaagctgcattaggt
ccttcatcaaacaacttcctttttcctgaatgcgtccctcggaagaatattcttaaccca
ccagctctgcttgatacctatgatgaacttaatacagatgaattcaatgcagtgcgtcgg
atcctaagcttgcagggctcaccaccttatcttcttggggggccgcttattggcactgat
tggcaaaggtatttacctgaagaaaaagcttcaacaagaacaggagtggttgtttgtaag
gcagtaattgaaatatataaaacctctaaagagaacaggattcttatatgtgcacctaca
aaccgcacatgtgatatgctaatgagaagtttgagggtcagggaggtgattcaagagtca
gatatgtttcgagccaatgctgcatttcgagagatagatggggtacccattgacattctg
cgctcatgtcctgtaaaagatgaatgttttgcatgtcctccactccataaacttcagaaa
ttcaggataattctgtcaacttttgtgagtagctttcgactgcacaatcaaggtatagct
gccggacattttagtcatatttttctagtagatgcctcatcaaccacagagccggaagca
acaatagctttggccaattttgctgatgagaatacatctgttattgttactggtaaacct
ggaaaccgttcacgttgggtccgctctgacatggcaaggaaatatggcttgaggaagtca
tattttgaaagactttgtgaagtcgggccatatcaaatcctcaatccaatgttcatcaca
gagctggttggctttgagcaatggtcaaaggacatctatgaatactaa
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