Castanea sativa (European chestnut): 142615771
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Entry
142615771 CDS
T11266
Name
(RefSeq) putative RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142615771
03036 Chromosome and associated proteins [BR:
csaa03036
]
142615771
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
142615771
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
142615771
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
142615771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
142615771
NCBI-ProteinID:
XP_075644712
LinkDB
All DBs
Position
11:complement(11608830..11614718)
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AA seq
685 aa
AA seq
DB search
MSCFLEILKCILCCEEDSYDDSYSRTRSRPFQLEFGSERNEYLVRNSSRTPTPTPTTTTP
LYRDHYQILAKSSLPSASSPYYQTKVAIDSWISSSVTPQSSSSSKPPLSSYVPPQFSTNE
VSHSSKSSSPLPPAFSSRSLQSPSTQSAPSYLSQSSPKPKPLPSSSSSSPSSLKPPVPSS
KAPSASSPTSYKPSQSSPSTSKQPPDFKPILHIAPNNVTDEERKRSYICEKGTAIYAVPE
DIKGLIKRDIVPEVLKQPLSPSTYKAYFAALLYAEDYYLDKWSDFLLKKVTLELEKAAVF
KKSKKNKYSKGSAEKADKIFVAFDIDRIREKRPYLLSRDMVNARPSDKKVEPFQGFVYRV
VRSNRVLVEFGDDFHSQHHPNRKYDISFSFNRVCLKRAHQAIEAAFALDPLSHNLLFPEC
VSRKNIVSPPALLDAYDKLNTNELNSVRRILSFRGSPPYLLGGELVGSEVKRSLPEPKAP
ATARTGLVVCEAVIELYKTFKGSRILICAPTNHTCDELTISLREVVPDSDMFRANAAFRE
VKRVPVDILLSCPMKDECFTCPPLAKLRKYKIILSTFVSSFRLYSEGIPAGHFSHIFLVD
ASSTTEPEATIALANFANENTAVIVTGAPGDCPGWVRSPMAWNHGLQKSYFERLLDFRPY
NTLNPMFITEMVNSQQYPLVYLSPP
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgttttcttgaaatcttgaaatgtatcctttgttgcgaagaagatagttatgat
gacagttactctagaactagatctaggccttttcagctggaatttggttccgaaaggaat
gaatatttggtacgtaattcatctcgaactccaactccaactccaacaaccacaacccca
ttgtaccgtgaccactaccaaattttagcaaagtcgtcattgccaagtgcttcttcgcct
tattatcaaaccaaagttgcaatagattcatggataagcagctcagtgacacctcaatct
tcatcttcatctaagccgcccctatcttcctatgtgccacctcaattttccactaatgaa
gtttcccacagttctaaaagttcgagtccattgcctcctgcattttcttccagatcactt
caatctccatctacacaatctgcaccttcctacctatctcaatcttcacctaaaccaaaa
ccgcttccctcgtcttctagttcatccccatcatctcttaaacctccagttccttcttct
aaagccccatcagcttcttctccaacttcctataaaccatctcaatcttcaccatctact
tctaagcaacctccagattttaagccaattctgcatatagctcccaataatgtaacagat
gaagaaaggaagagaagttatatttgtgaaaagggtacagccatatatgctgttcctgag
gatatcaaaggtctgatcaagagagacattgtgcctgaagttctgaaacagcctttgtct
ccttcaacttataaggcttattttgctgccctattatatgctgaggattactacttggac
aaatggagtgacttccttttgaagaaagtgacattggagttggagaaagcagcagttttt
aaaaaatcaaaaaagaataaatattccaaaggaagtgctgagaaggctgataaaatattt
gtagcatttgacattgatcgtattcgtgagaagcggccatatcttttatcaagggatatg
gtcaatgcacgaccttcagataaaaaggttgagccatttcagggttttgtctatcgcgtg
gtgagaagcaatcgtgtattagttgaatttggagatgattttcattcacagcatcatcct
aatcgcaaatatgatatcagcttctcattcaacagagtgtgtctaaaaagggctcatcaa
gcaatagaagctgcatttgcattagatcctttgtcccacaacttactctttcctgaatgc
gtctctcggaagaacatcgttagcccacctgctctgcttgatgcctatgataaactcaat
acaaatgagttgaattcagtacgccggattttaagctttcggggctcaccaccttatctt
cttgggggcgagctcgtcggatctgaagtgaaaaggtctctacctgaaccaaaagcacca
gcaactgcaagaactggactggttgtttgtgaagcagtaattgaattatataaaaccttt
aaagggagtcggattcttatatgtgcacctacaaatcacacatgtgatgagctgacaata
agtttaagggaagtggttccagactcagatatgtttcgagccaatgctgcatttcgagag
gtaaaaagggtacccgttgacattctgctttcatgtcctatgaaagatgaatgttttaca
tgtcctccactagcaaaacttcgaaagtataagataattctgtcaacttttgtgagtagc
tttcgactatacagcgaaggtatacctgctggacattttagtcatatttttctagtggat
gcctcatcaaccacggagccggaagcaacaatagctttagctaattttgctaatgagaac
acagccgtcatagttactggtgcacccggagactgtccaggttgggtccgctctcccatg
gcttggaatcatggattgcagaagtcatattttgaaagacttcttgatttcaggccatat
aacaccctcaatccaatgttcatcacagagatggtcaactcacagcaatatccacttgta
tatttgtcgcctccctag
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