Castanea sativa (European chestnut): 142615818
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Entry
142615818 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142615818 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142615818
03015 mRNA surveillance pathway
142615818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142615818
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142615818
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
142615818
NCBI-ProteinID:
XP_075644779
LinkDB
All DBs
Position
11
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AA seq
423 aa
AA seq
DB search
MAKPSRGGRRSPPSGSASGSSSRSRSYSGSDSRSRSSSRSRSVSRSRSLSRSRSRSRSFS
SSSSPSRSASSRSPSAPPPKKSPAEVARRGRTPPSQSKRTSPPPRKASPIRESLVLHIEK
LSRNVNEGHLKEIFSNYGEVVNVELAMDRAVNIPRGYGYVEFKTRVDAEKAQLFMDGAQI
DGNVVQARFTLPPRQKLSPPLKAIASAPKRDVPKTDNVNADGEKDGPKRQRELSPRRKPA
TSPRRRSPITRRGVSPRRPPDSPPRRRPDSPVRRRLDSPYRRGDTPPRRRPTSPGRGRSS
TSPRRNRSPARRMRGSPVRRRSPLPPRRRSPPRRARSPLRRSPIGRRRTPPIRRTARSRS
RSASPRRGRAPVGRRGRSSSYSGSPSPRKLPRRSRSRSPRRPIKGRSSSNSSRSSSPLLP
RKP
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgaggaggccgccggtcgccgccgtcagggtccgcgtcgggctcg
tcctctcgctcccggtcctactccggctccgactctcgctctcgctccagctctcgctcg
cgctccgtctctcgctcgcgctctctctctcgctctagatctcgctccaggtccttctcc
tcctcttcctctccctctcggagcgccagttctcgcagccctagcgcccctcctcccaag
aaaagtcctgctgaagtagctaggagaggtcgcactccaccttcacaatctaaaagaact
tctccacccccaaggaaagcttctcctattcgagagtcgcttgttcttcacattgagaaa
ctaagcaggaatgtgaatgaaggccatttaaaagaaatattcagtaactatggtgaagtt
gtaaatgtggagctagcaatggatcgcgctgtcaatattccaagaggatatggatatgtg
gagttcaagacaagagtggatgctgaaaaagcacaactattcatggatggtgcacaaatt
gatgggaatgtggttcaagcgaggttcacgttacctccaagacagaagctgtcgcctccc
ctaaaagccattgccagtgcaccaaaaagagatgtgcccaaaactgataatgttaatgct
gatggtgagaaggatggaccaaagcgacaaagagaactttctccccgtcggaagcctgct
acctcacctcgaaggagatcccctattactcgaaggggtgtatctcctagacgaccacca
gattctcctccacgtcgtcgtccagattctcctgttcgtcgtagattggattctccttat
cgccgcggtgatacacctccgaggaggaggccaacatctcctggccgtggtcgttcctca
acttcaccaagacgcaatagatcccctgcaagaaggatgcgtggcagtcctgttcgcaga
cgttctccacttcctccaaggcgccgttcacctccaagacgagctcgtagtcctcttaga
aggtctcctattggtcgtaggcgtactcctcctattcgtagaactgctcgctcacgttca
cgatcagcttctccacggagaggtcgagcaccagtcggaagacgtgggcgatcatcatcc
tactctggatcacctagtccacgcaagttacctcggagatcaaggagtcgtagcccgaga
aggcccattaaaggaagaagcagtagcaacagcagccgcagtagttcgccactgctgcct
cgtaaaccatag
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