Castanea sativa (European chestnut): 142616521
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Entry
142616521 CDS
T11266
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142616521
03009 Ribosome biogenesis [BR:
csaa03009
]
142616521
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142616521
Spliceosome [BR:
csaa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
142616521
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
Pre-60S particles
Helicases
142616521
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ARTD15_N
AAA_22
RuvA_C
Motif
Other DBs
NCBI-GeneID:
142616521
NCBI-ProteinID:
XP_075645474
LinkDB
All DBs
Position
1:11930578..11941449
Genome browser
AA seq
750 aa
AA seq
DB search
MAPAFVFETSSDEEHDDFEPENEEQEEQEEEEEEEAEDEDEDEDDDELPLNKKTESPWDF
APYYESVAEEHARKSTTSIDFKITKALQNRTVPIIPNSANDDDSESDSDKQEEEDRIEDE
DEETGDAVDVKSFYVPSDGASFSANSFIELNLSRPLLRACEALGYSKPTPIQSAVIPLAM
NGSDICGSAVTGSGKTAAFALPTLERLLFRPKRVPAIRVLILTPTRELAVQVHSMIEKLA
QFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLEDLAVLILDEA
DRLLELGFSAEIRELVRLCPKRRQTMLFSATMTEEVDELIKLSLTKPSRLSADPSKTLPR
SLTQEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKILFGLAGLKAAEL
HGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYECPREYKSYIHRVGR
TARAGREGYAVTFVTDNDRSLLKDIAKKAGSKLRSRTVAEQSITKWSEIIEQMEDQVAEI
FEEEREERTLRKAEMEVSRAENLIAHREEIYSRPKKTWFVTEKEKRLVAKASKASVEKET
NSGKAVISAQEAEDLKMKEKRKREHEKNLPRKKRRKLEAAREMLEDENQMKKLEGNDKNK
NEKTGLSLVELGYRRAKAVKAVKKALDTGKIVKKKTKKSEHPNQRQQSRTREMQELFQSD
MSEKKQKRNSVPGKKKSKHSFKSKSRYKRK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggctccagctttcgttttcgaaacctctagcgacgaagaacacgatgattttgaaccc
gaaaacgaagaacaagaagagcaagaagaagaagaagaagaagaagcagaagacgaagat
gaagacgaagacgatgacgaactgcccttgaataagaaaacagaatctccatgggacttt
gctccctactacgaatcagtagctgaagaacacgcccgtaaaagcacaacctccatcgat
ttcaaaatcaccaaagcactccaaaatcgcaccgttcctatcatccccaactccgccaac
gacgatgactctgaatccgattccgataaacaagaagaagaggataggattgaagatgaa
gatgaagagaccggcgatgctgtcgacgttaaatcgttctatgtgccttctgatggagct
tcattcagtgccaattcattcattgagctgaatttatctcggcctttgcttcgtgcttgc
gaggctttggggtacagtaagcccacaccaattcagtcggcggttataccactagcaatg
aatgggagtgatatatgcgggagtgcagttactggttccgggaagacggctgcctttgcg
ctgcctactttggagagattactgttccgtccaaaacgtgtgccagcgataagggttctt
attcttaccccaaccagagagttggcagttcaggttcacagtatgatagagaaacttgct
caatttactgacatcagatgttgcctggttgttggtgggctttcaacaaaggtgcaagag
gcagccttgagatcaatgcctgatattgttgtggccactccaggacgcatgatagatcat
ttacgcaattctatgtctgtggatttggaagatcttgcagtactaatccttgatgaggct
gatcgccttctggagcttggatttagtgctgaaattcgtgagctggtccgtctatgtccg
aaaagaaggcagaccatgcttttttcagctacaatgactgaggaagttgatgagcttatc
aagctttctctgaccaaaccctctcgcctctcagcggacccatccaaaacactaccacga
agtttgactcaggaggtggttaggatacgccggatgcgtgaagtaaatcaggaagcagtt
cttcttgcattgtgctcaaagacttttacctccaaagttatcatcttcagcggaacaaaa
caggctgcacataggttgaagattctatttggattagctggccttaaagctgctgagctt
catggaaatcttactcaagtccagcgccttgatgctttggaacttttcagaaagcagcaa
gtcgactttttgattgcaactgatgtagctgctcgaggacttgatatcataggtgttcaa
acagttattaattatgaatgtcctcgggaatataaaagctatattcatcgtgttggtcgt
acagcaagagctggtagggaaggatatgctgttacatttgttacagataatgaccgatct
cttttgaaagacattgctaagaaagctggttccaagctgagaagtcgaactgttgcagag
caatcaataaccaagtggtctgagataattgagcaaatggaagatcaagtggctgagatt
tttgaagaagagagggaagagagaaccctaagaaaagctgaaatggaagtatcaagggca
gaaaatttgattgcacatagggaggaaatatattcacggcccaagaaaacctggtttgtt
accgaaaaggagaaaaggcttgttgcgaaggcatcgaaggcatctgtggaaaaagaaacg
aattctggaaaagcggtaatcagtgcccaagaagctgaagacctcaaaatgaaagaaaaa
aggaagcgagagcatgagaaaaatttgccacggaagaagcgtcgaaaattggaagcagct
agagaaatgttggaggatgaaaatcaaatgaaaaaattagaaggtaatgataaaaacaag
aatgaaaagactggattgtcacttgttgaactgggttaccgacgggcaaaagcggtgaag
gctgtgaagaaggcactagatactggcaagattgtgaagaagaaaaccaagaaatctgaa
catcctaaccaaagacaacaatcaaggacaagagagatgcaggagctatttcaaagtgac
atgagtgagaaaaagcagaaaagaaattctgttccaggcaagaaaaagtccaaacattca
ttcaagagcaagtcaaggtataagcgcaagtaa
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