Castanea sativa (European chestnut): 142617337
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Entry
142617337 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142617337 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142617337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142617337
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142617337
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142617337
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
142617337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
142617337
NCBI-ProteinID:
XP_075646255
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All DBs
Position
11:35477977..35483955
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AA seq
653 aa
AA seq
DB search
MRPLYNSFPQQPKSSTAPPSQQVMPSNHSNANSSNLVQNTKKFRPQFGMNNNPQIQVPFN
NSNAHSNPNMRPSINRPGFMNPPLQSSHLGMPHLGSQPGQSHVGFSSQNKVCNMNPVQGF
PVNGQFCNMAQNPNQANVSQPAFVHNMQNSNQQLNQNMGFPNGQFCMPNMLQNMNQFMPL
QMPNSSQVISYGVPICPPYMGVPNQAPRATVPQNPTFFANSQFGLGHCNQVNQNQQNLVP
PTANANALKPSPFAAQQLQGGNLPGLSNHCSVQPQDTKNYQASVFTGVQGNLVNNGGIDN
PSSNRQDSPNKNYTMNPKGGQLQGGFQKSQFHRMKNARRGFPNERKGKGFGKEKAGKFGH
VNSNNQARGQKRSLSLTYTTQEIQQWCEARRKNYPSKATVEKKQVQKLADAESIAREAKL
RREQLKEILAKQAELGVEVAEVPSHYLSDSEKQGHRREENRMPFTKKGRFRNRFDKRGRY
EKKDRFAKKQKLADKNSSDVSSLNKKKPTLLQKLLSADVRRDKSHLLQIFRFMVMNSFFT
DWPDKPLKFPSVIDKESGCECEVVEEKSSPVGKDAEGGYKAVVNKSHDEEEDDDDDDDDD
DEDDNGVDEDKNDGDDNNELSYFARIEGIIGERTEIPEEEEGEIVDYNDTLPL
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctctctacaattcctttcctcagcaacctaagtcctccactgctccaccttct
caacaggttatgccatctaatcattcaaatgcaaattcatctaatttagtgcaaaacacc
aagaaatttcgaccccagtttggcatgaacaacaaccctcaaattcaagtccctttcaat
aattccaatgcccattcaaaccccaatatgaggccttccataaatcgacctggtttcatg
aacccacctttgcaaagttctcatctgggtatgccccatttgggttctcaaccaggccag
tcccatgtgggattcagttcacaaaacaaggtatgcaatatgaacccggttcaagggttt
ccggttaatgggcaattctgcaatatggcgcagaatccgaaccaagccaatgtttctcag
cctgcttttgtgcataatatgcagaattcaaaccaacagctcaatcaaaatatgggtttt
ccaaatgggcagttttgtatgcccaatatgttgcaaaatatgaaccaatttatgcccttg
caaatgccaaattcttctcaagttatttcttatggtgtccctatttgtcctccatacatg
ggtgttccgaatcaagcacctcgggccacagttcctcaaaatcccaccttttttgcaaat
tcgcagtttggtcttggtcattgtaatcaggttaatcagaatcagcaaaacttggttcca
cctacggcaaatgcaaatgcattaaaaccatcaccttttgcagctcagcaattgcaagga
gggaacttacctggactatctaatcattgttcggttcaaccacaggatactaagaattat
caagcttctgttttcacaggggtacaggggaatcttgttaataatggtgggattgataac
ccaagctccaacaggcaagattcaccaaacaaaaactacactatgaatccaaaaggaggg
caattgcaagggggatttcagaagtctcagttccatcgtatgaaaaatgcaaggagaggg
tttcctaacgaacgcaaggggaaagggtttggcaaggagaaggcaggaaagtttggtcac
gttaattctaacaaccaagccaggggtcagaagagatctctttctttgacctacacaaca
caagaaatccaacagtggtgtgaagcacgtcggaagaactacccatcaaaagccactgta
gagaagaagcaggttcagaagctagcagatgctgagagtattgctagagaggcaaaactg
cgaagagagcaactcaaggagattctagcaaagcaagctgaattgggagtagaagttgca
gaggtgccatcgcactatctatcagattcggagaaacaagggcatagaagggaagaaaac
agaatgccgtttacaaagaaggggagattccgaaacaggtttgataaaagaggaagatat
gaaaaaaaagaccggtttgctaagaagcagaagcttgcagacaagaattcatctgatgtc
tcttctttgaacaagaaaaagccaacattactgcagaagcttctcagtgcagatgtaagg
agagataaaagccacttattgcagatttttaggttcatggtgatgaactctttcttcacc
gattggcctgataaacctctaaaatttccttcagtgatagataaagaaagtgggtgtgag
tgtgaggtggttgaagagaaatcttcacctgtgggaaaagatgctgaaggtggctacaag
gctgtggttaacaaatcccatgatgaagaagaagacgatgatgatgatgatgatgatgat
gatgaagatgataatggtgtagatgaagacaagaatgatggtgatgacaataatgaattg
tcttattttgctaggatagaaggtataatcggggagagaactgagatacccgaggaggaa
gagggtgaaattgttgactataatgacactcttcctctctaa
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