Castanea sativa (European chestnut): 142617418
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Entry
142617418 CDS
T11266
Name
(RefSeq) vacuolar protein sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
142617418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csaa04131
]
142617418
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csaa04147
]
142617418
Membrane trafficking [BR:
csaa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
142617418
Exosome [BR:
csaa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
142617418
Exosomal proteins of colorectal cancer cells
142617418
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
PH_TFIIH
Peptidase_S32
Motif
Other DBs
NCBI-GeneID:
142617418
NCBI-ProteinID:
XP_075646406
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Position
11:35462865..35473539
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AA seq
448 aa
AA seq
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MATTSLPKADLTSSGRPVFLPNEIECSILSSVDLECDDIPNFPLLKSGLLILTTHRLLWL
PDNNPSSSTSSAAVALPLSFVTHIFSTKKSVKTLFHSPRVRFQASLDPSKSVVMTAVMRG
KGDTDAFLAKFWENWRARAWENDVQTQTRAQTAVGSSSVSGSGPASGSGGFYTREGAVRM
VGVSGILRKEQEMWESTDKSLQEAFQDLNALMSKAKEMVILAEKMRQKLLSGSNSKSSAT
NDDEVGSKEEMQDWMLSVGIVSPVTKESAGALYHQQLSRQLADYVRIPLERAGGMINLID
VYCLFNRARGTELISPDDLLRACSLWEKFDVPVMLRKFDSGVMVIQNKSHSDEEVFARIK
ALVTNPDTLRTGISASDAAMTLGIAPGMAKEHLLTAESKGLLCRDISPDGFRFYVNLFPE
ISTDDVYLVKDYGIYNTWVRVASASRLE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacctctctccccaaagcagacctcacaagcagcggtcgacccgtctttctc
ccaaacgaaatcgagtgctccatcctctcttccgtcgacctcgaatgcgacgacatcccc
aacttccctctcctcaaatccggcctcctcattctcaccacccaccgcctcctctggctc
cccgacaacaacccctcctcctccacctcctccgccgccgtggctctccctctctccttc
gtaacccacatcttctccaccaagaagtccgtcaaaaccctcttccactccccgcgcgtc
cgcttccaagcctccctcgacccctccaaatcggtggtcatgaccgccgtgatgagaggg
aagggtgacaccgatgcgtttctcgccaagttctgggagaactggagggccagggcttgg
gagaacgatgttcagacccagactcgggctcagactgcagttgggtccagttcggtttcc
gggtcgggtccggcttctgggtctggtgggttttacacgagggaaggggcggtgaggatg
gttggagtgtctgggatactgcggaaggagcaggagatgtgggaaagtactgacaagagc
ttgcaggaagcttttcaggatttgaatgctcttatgagtaaggctaaagagatggttata
ctagcagagaaaatgaggcaaaaacttttgtctggctcaaactctaaatctagtgcaaca
aatgatgacgaagtgggttctaaagaagagatgcaagattggatgttgagtgttggtatt
gtatcccctgttacaaaagagtctgctggagcgctgtatcatcaacaattgtcccgccag
ttggcagattatgttagaattccgcttgagagagctggaggaatgatcaatcttatagat
gtctattgtcttttcaaccgtgctcgaggcacagaattgatctcaccggatgatttgttg
cgagcatgttctctctgggagaagtttgacgttccagtgatgcttcggaagtttgatagc
ggagtcatggtcatccagaataagtcccacagtgatgaggaggtttttgcaagaatcaag
gcccttgtaacaaatcctgataccctacgaactgggataagtgcaagtgatgctgcaatg
acattaggaattgctccaggcatggcaaaggaacatcttctaactgctgagagcaaaggt
ttactatgcagagatataagccccgatggcttccgattttatgtcaacctctttcctgaa
attagtacagatgatgtttacttggtgaaagattatgggatctataatacatgggttagg
gtggcctctgcttctaggttggagtga
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