Castanea sativa (European chestnut): 142617564
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Entry
142617564 CDS
T11266
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142617564
03036 Chromosome and associated proteins [BR:
csaa03036
]
142617564
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
142617564
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
142617564
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Spt6_S1
HHH_9
HTH_44
Tex_central_region
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
142617564
NCBI-ProteinID:
XP_075646581
LinkDB
All DBs
Position
11:complement(56695269..56705940)
Genome browser
AA seq
2195 aa
AA seq
DB search
MADFIVSDEDDGIVIGGASIRPRKSRKKKLGEIAGVSTVAMGEARDIFGDVDELLRLRKK
SLAQSARSRDSAELQGKRLEDEFDPIIVKEKYLTEKDERIRKIDVPERLQISEEKTKPRL
DEESIEEESSWILGQLPTNMIPFWFLKRVTEESDKGTSEESNALKYFKADIIRFLKLHHV
EKYDIPFIAMYRKEQCLSLLKDPEEGEMENDEGEEIEGVPKMKWHKVLWAIKDLDTKWLL
LQRRKRALYSNYNLRYEEEAHRIYDEARLNLNKKIFKSILKSIWSAESEREVDDVDMKFN
LHFPPDEVEGEFKRPKRKSLYSMCSKAGLWEVASKFGWNSEQFGLQITLKEVMTEALEDL
KETPEEIALNYKCAMFKTPEDVLKGARHMAAVEISFEPCLRKYVRSFFMDNAVVSTSPTS
VGTKLIDSSHQLARAKWLREKPLSKFEDAQWLLIQKAEEEKLLQVSITLTKTHLDKLSRQ
CNDYYLSDGVSKSARLWNEQRKLILQDAFSKFLLPSLEKEARVLLTAQAKKCLLMECGKQ
LWNRASVAPYQRKEHYVGLDEETAPRIMACCWGPGNPATTFVMLNSSGELLDWMYAGSLS
RQSKNVDDLQCKKDQAQRLLKFMTDHQPHVIVLGAANLFCKRLKDEIYEIIYNMVEEYPR
NVSQEMAEISIVYGDESLPRLYEHSRISSEQLPGQPGIVKRAVALGRFLQNPLAMIATLC
GPGREILSWNLGSLEHFLTPDEKFEMVEQVMVDVTNQVGVDINLAASHDWLFAPLQFVSG
LGPRKADCLQRALVRAGVVTSRMYLFAHVLSTKKVFSNAIGFLRVRCSGLAASSSDFDLL
DDTRIHPESYPLAEALAGEVHTKYAETADYDETPIEYVKNNPQLLENFIVHNYAEDNNKD
KRETLYDIKMELLHGFCEWRSPFKELSQDEEFYILSGENRDSLVEGKIVQVTVRHVKTDR
AICVVDSGLTGILYKNEFADQLDDVDLTDKLQAGHVLACKIKQIQKNRCQLIITCKESEL
NNSQCQNSCDVDPYYREHQMHALSQLEKSRRAAVAKKNFIPRMIVHPHFQNMTADEAKEF
LSDKDVGASVICPSSKGPSCLILTLKIYDGVYTQKEIVEDRKDQKASLLTLGTTLRIDED
SFEDLDEVMDRYVDPLVSHLKAILCYRKFRKGSKTEIDDLLKVEKSENPMRIVYCFGVCY
IHPGAFILSFIRNTNPHHEYVVLHHKGYIFRKHTFHNIDRLVAYFQKHINDLPPQSTHSA
SAIVPMVSTAYRSCLGGVSMGGSREKNEINRRGQSCPERDTLSAPGSQGKNNSMSGGSQD
RHSSGLTTKPHVEQSYCNYNSRRESNTNGGKSSGYGSTFQWGTDCTNGSGIENGWKNFPG
AKIQNFAGREAFPGGWSDNQISSTSNGNWSGGDENVTKCSWGVKNIVGREGESATANDAC
GGGKSSNTGVKDGKQNGNCLNKNSDTWGGRDWVSGQRGSGIDSGGNWGIVSNDNWGRAGG
NANDKGSCGWGEWGGSRSGGSGTKDVGPRNEDWGDKSHGGRLNIDLGSKEGGRGTITSGN
GCRVSNSWVDGRDGAATSLSSWANGGNNDVKKSDDWGAWGDRKSGNSGANKGKGNDNWSN
KKNTGWDGCAGGSKESGSDPVTSGNGCKVSNSWVDGRDGAATGLSSWAAGGNNDVKKSAD
WGAWGDRKSGNSGANKGKGNDSWGNKKNTGWDGCAGGSKESGSDTVTSSGNGCKVNNSWV
DGRDGAATGLRSWAAGGNNDGKKSDYVGAWGESKSGNSGANKGKGNDNWGNKKNTGWDGC
AGGSKESGKETVISGNVCTERNSRVDSRDGAATSLRSWASGSNNDGKKSDNWGSWEDRTS
GNSGVKKGQGNDNWGNKKTNGREGCDRGSRQSGSDVGIVNNRGGVSNAGWGDCKVGTSTN
VGWGASGENVSKKGLGNENWGNKKTIGWEGCSRQSGSDAGAGNNAVGVSNASWGCKGGTS
TNVGWGAGGENVGKKGQGNDNWSNKKTTGWFGCDRGRRQSGSDAGTINIGGGVSNAGWGD
CKGGAATNGDWGAVGENAGKKSGGTGEWGNKNNAGRGGGRAWHSAAEPGSEVKNASWGER
SGNRGNKNNTRWDGSDSGSRPSGGGARTGDNGGGVSSGGWGNSKGGAAASGGWGASGAKD
GPKSGGWGEWGKKKSNAETDSKAKNAGWGAISGWK
NT seq
6588 nt
NT seq
+upstream
nt +downstream
nt
atggcggattttattgttagtgatgaagatgatggaattgttattggtggagcttcaatc
agaccaaggaagtcaaggaagaagaagttaggggagattgctggtgtttcaactgttgca
atgggggaagcacgtgacatatttggtgatgttgatgaacttttgagactacgcaaaaaa
agtctagctcagagtgccagatctcgtgactctgctgagttgcagggaaagagacttgaa
gatgaatttgaccccattattgttaaagagaagtatctgacagagaaggatgagagaatt
cgcaagattgacgtgccagagaggctacagatatctgaggagaaaactaagccacgtctt
gatgaagaaagtatagaagaagaaagttcttggatactaggtcaacttccaacaaatatg
ataccattctggttcttgaagagagttacagaggaaagtgataaagggactagcgaagaa
tctaatgccttaaaatattttaaggcagatatcataaggttcttaaagttgcatcatgtg
gagaagtatgatattccttttatagctatgtatcggaaggagcagtgcctgagtctattg
aaagatccagaggaaggtgaaatggaaaacgatgaaggggaagagatagagggagtgcca
aaaatgaagtggcataaggtactatgggccatcaaggacttggacacaaagtggttactt
ctgcagaggcggaagcgtgctctctattctaactacaacctgcgttatgaagaagaagct
cacagaatctatgatgaagcaaggcttaatctgaataagaaaatcttcaaatcaattctg
aaatctatatggagtgctgaatcagagagagaagttgatgatgttgacatgaagtttaat
ttgcatttcccaccagatgaagttgaaggggagttcaagagacctaagaggaaatcacta
tatagcatgtgctctaaggctggcctatgggaggttgcaagtaaatttggttggaattct
gagcagtttgggttgcaaatcaccctgaaagaagtgatgacagaagcattggaggattta
aaggaaactcctgaagagatagctttgaactataagtgtgcaatgtttaaaactccagaa
gatgttcttaaaggtgctaggcacatggctgcagtggagatcagctttgagccatgttta
aggaaatatgtccgtagcttttttatggataatgccgttgtctcaacaagccccacctct
gtaggaactaagttgattgactcttcccatcagctagcaagggccaaatggctacgtgag
aagccactgtcaaaatttgaggatgcccaatggctccttattcagaaggctgaagaagag
aaacttcttcaggtttctatcacattaacaaaaactcacctagataagttgagtaggcag
tgtaatgattattatctcagtgatggtgttagcaaatctgcacgactctggaatgaacag
cgcaagttaatactacaggatgccttttcaaaatttcttctcccttcattggagaaggaa
gctcgggtgcttttgacagcccaggcaaagaaatgtctgcttatggagtgtggaaagcag
ttgtggaacagggcttctgttgcaccatatcagcgaaaggaacattatgttgggctagat
gaggaaactgcaccaaggataatggcttgttgttggggtcctggaaatcctgcaaccaca
tttgtgatgttgaattcatcaggagagttgctggattggatgtatgctgggtcccttagc
cgacagtcaaagaatgttgatgacttgcagtgcaagaaagatcaagcgcagcgtcttctc
aagttcatgacagatcatcaacctcatgtcattgttcttggggcagcaaatttgttttgt
aagcggttgaaggatgagatatatgagatcatatataacatggtggaggaatatcccaga
aatgttagtcaagaaatggctgaaattagcattgtttatggggatgaatcactgcctcgt
ctgtacgaacactcacggatttcttcagaacagttacctggacaaccagggattgtcaag
agagctgtggctcttggtcgcttccttcaaaacccattggccatgattgcgacattatgt
gggcctgggagagagatattatcatggaatcttggctccttagagcattttctcactcct
gatgagaagtttgaaatggttgaacaggtcatggtggatgtcaccaaccaagtgggtgtt
gacataaatttggctgcaagccatgattggctttttgctcctttgcaatttgtatctggg
cttggacccaggaaggctgattgtttacagagggcattagttcgagctggagtagttacc
tctcgaatgtacttgtttgctcatgtacttagtacaaaaaaggtgttttcaaatgcaatt
ggtttcttacgtgtaaggtgcagtgggttggctgcttctagtagtgattttgatcttttg
gatgatactagaattcatccagagtcatatcctcttgctgaggctttggctggtgaagtg
cacacgaaatatgctgaaactgcagattatgatgagacacctatagaatatgttaagaac
aatccacaactgctagaaaatttcatagttcataactatgcggaggataacaacaaagat
aaacgagagactctttatgacattaaaatggagttgcttcatggattttgtgagtggcgt
agtccttttaaagaattaagtcaggatgaggagttctatattttgtctggtgaaaatagg
gattcacttgttgaaggaaagatagttcaagtaacagttcggcatgtaaaaactgatcga
gcaatatgtgttgttgactctggcttgacaggaatactgtacaaaaatgaatttgcagat
caactggatgatgttgatttaacagacaaattacaagcaggtcatgtgcttgcctgcaag
attaaacagattcagaagaacagatgccagctgattataacttgcaaagaaagtgagttg
aacaatagtcaatgtcaaaactcatgtgatgttgatccctattaccgtgaacaccagatg
catgccttaagtcagctggagaagtcccgtagagcggcggtagcaaaaaagaattttata
ccaaggatgatagttcatccccattttcagaatatgactgctgatgaagcaaaggagttc
ctttcagacaaggatgttggagcaagtgttatttgtccaagctcaaaaggtccatcttgt
ctgattttaactctgaaaatttatgacggagtttatactcaaaaagaaatagttgaagat
aggaaggatcagaaggctagtttgcttacccttggaacaacactgagaattgatgaggac
agttttgaagatttggatgaggtcatggatcgatatgttgaccctttggtatctcacttg
aaggctatcctttgttatcgtaaattcaggaaaggctcaaaaactgaaattgatgacctc
ttgaaggttgagaaatcagaaaacccaatgaggatagtttattgctttggtgtttgttat
atccatcctggtgcttttattttgtcttttataagaaatacaaatccacatcatgaatat
gtagtgctgcaccacaagggatatatatttcggaaacatacatttcataacatcgaccgg
cttgtggcatatttccagaaacacatcaatgatttgcctccacagtctacccattcagct
tctgccatcgtaccaatggtcagcactgcttataggagttgtttaggtggggtatccatg
ggtggcagtagggaaaagaatgagatcaacaggagaggacagtcatgtccagaaagagat
accttgtcagctcctggttctcaaggaaaaaataattctatgagtggtggcagtcaagat
aggcattcaagtggcttgactactaagccacatgttgaacaaagctattgcaattacaat
agcaggagggaaagcaacactaatggagggaagagttctggatatggtagtacttttcaa
tggggcacagattgcacaaatgggagtgggatagaaaatgggtggaaaaattttcctggt
gctaaaatccagaatttcgctggtagagaagctttccctggtgggtggagcgacaatcag
attagtagtaccagtaatgggaattggagtggtggagatgagaatgttacaaaatgtagt
tggggggttaagaacattgttggcagggaaggtgagagtgctactgctaacgatgcttgc
ggtggtggtaaaagtagcaataccggtgttaaagatggcaaacagaatggcaactgctta
aataagaacagtgatacctggggaggtcgtgactgggtaagtgggcaaaggggtagtggc
attgatagtggtggcaattggggcatagtaagtaatgacaattggggtagagctggtggt
aatgctaatgacaaagggagttgcggttggggggaatgggggggtagcagaagtggtggt
agtggtactaaagatgttggaccaaggaatgaagattggggtgataagagccatggtggc
cggctcaatattgacttgggtagtaaggaaggtgggagaggcactattactagtggtaat
gggtgcagagtaagtaacagttgggttgatggtagagatggggctgctaccagtttgagc
agttgggcaaacggtggtaataatgatgtcaaaaagagtgatgattggggggcatgggga
gatagaaaaagtggtaatagtggtgctaacaagggtaaagggaatgacaattggagcaac
aagaaaaatactggctgggatggttgtgctggaggtagtaaggaaagtgggagtgaccct
gttactagtggtaatggatgcaaagtaagtaacagttgggttgatggtagagatggggct
gctactggtttgagcagctgggcagccggtggtaataatgatgtcaaaaagagtgctgat
tggggggcatggggggatagaaaaagtggtaatagtggtgctaacaagggtaaaggcaat
gacagttggggcaataagaaaaatactggctgggatggttgtgctggaggtagtaaggaa
agtgggagtgacactgttactagtagtggtaatggatgcaaagtaaataacagttgggtt
gatggtagagatggggctgctactggtttgagaagttgggcagccggtggtaataatgat
ggcaaaaagagtgattacgttggggcatggggagaaagcaaaagtggtaatagtggtgct
aacaagggtaaaggaaatgacaattggggcaataagaaaaatactggctgggatggctgt
gctggaggtagcaaggaaagtgggaaagagactgttattagtggtaatgtgtgcacagaa
aggaacagtagggttgatagtagagatggggctgctaccagtttgagaagttgggcatcc
ggcagtaataatgatggcaaaaagagtgataattgggggtcatgggaagataggacaagt
ggtaatagtggtgtcaaaaagggtcaagggaatgacaattggggcaataagaaaactaat
ggccgggagggctgtgatagaggtagtaggcaaagtggtagtgatgttggtattgttaac
aataggggtggggtaagtaatgctggttggggggactgtaaagtaggtacttctacaaat
gttggttggggagctagtggtgaaaatgttagcaaaaagggtctagggaatgaaaattgg
ggcaataagaaaacaattggctgggagggctgtagtaggcaaagtggtagtgatgctggt
gctggtaacaatgcggttggggtaagtaatgccagttggggctgcaaaggaggtacttct
acaaatgttggttggggagctggtggtgaaaatgttggcaaaaagggtcaaggaaatgac
aattggagcaataagaaaactactggctggtttggctgtgataggggtaggagacaaagt
ggtagtgatgctggtaccattaacattgggggtggggtaagtaatgctggttggggggac
tgcaaaggaggtgctgctacaaatggtgattggggagctgttggtgaaaatgctggcaaa
aagagtggtggtacaggggagtggggaaataagaacaatgctggtagagggggtggaagg
gcttggcattcagctgctgaacctggttcagaggttaaaaatgctagttggggtgaaagg
agtggcaatcggggcaataagaacaatacccgctgggatgggagtgacagtggtagtagg
ccaagtggtggtggcgctcgtactggtgataatgggggcggagtaagtagcggtggctgg
gggaattcgaaaggaggtgctgctgcaagtggtggatggggagctagtggggcaaaagat
ggcccaaagagtggtggttggggcgaatggggaaagaagaagagcaatgctgaaactgat
tcaaaggctaaaaatgctggatggggtgctatttctggatggaagtaa
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integrated database retrieval system
