Castanea sativa (European chestnut): 142617717
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Entry
142617717 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142617717
KO
K12874
intron-binding protein aquarius
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142617717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142617717
Spliceosome [BR:
csaa03041
]
Complex B
Other components
Prp19-related factors
142617717
Complex C
142617717
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
ResIII
UvrD_C_2
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
142617717
NCBI-ProteinID:
XP_075646783
LinkDB
All DBs
Position
11:complement(61883771..61896208)
Genome browser
AA seq
1526 aa
AA seq
DB search
MTKVYGTGAYDFKRHRVAEYPVDPTSSTTQPAAEKPVESALPSTITLSEIQRDRLTKIAE
DNWSKAAGGGKDSGGEKRFDPELVKEIYKTELLVKGGRKPVPLQRVMILEVSQYLENYLW
PNFDPDTASFEHVMSMILMVNEKFRENVAAWVCFYDRKDIFKGFLERVLRLKEGIELSIA
EKTNYLVFMINAFQSLGDEVVSETVLRLASLQSWHSLSYGRFQMELCLNQELIKKWKRMI
KREAKEATKRGELFDPSTKLEVKFLRNLIEEFLEVLDSTVFSWEQHVNEDNKIIDAYGLK
QVDDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYKHEKGKLFAQL
VDLLQFYEKFEINDHVGTQLTDDEVLQSHYDRFQSFQLLAFKKIPKLRELALANIGAINK
RADLSKKLSELPPMDLRDLVCHKLKLISEEDPWSERVDFLIEVMVSFFEKQQSQKEAINA
LPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRE
DIQEAVPHLLAYINNEGETAFRGWSRMAVPVKEFKITEVKQPNIGEVKPSSVTADVTFSI
SSYKAQIRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKASVPQRLGLQYVRGCEIIEVR
DEEGTLMNDFTGRIKRDEWKPPKGELRTVTIALDTAQYHMDVSNIAEKGADDVYGTFNIL
MRRKPKENNFKAILESIRDLMNEYCIVPDWLHNVFLGYGNPSAAQWTNMPDLLEMVDFKD
TFLDADHLKDSFPDYQVCFINTDGSENLQPMPPFRIRLPKTQKGGSHALTGNKISGVDSA
DGVNMEDTLIVEAYTPPDPGPYPQDQPKQNSVRFTPTQIGAIISGIQPGLTMVVGPPGTG
KTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELAT
DLDFSRQGRVNAMLVRRLELLGEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFL
AACAENEDKPTFVKDRFPFKEFFSDTPHPIFMGESFEKDMRAAKGCFRHLKTMFQELEEC
RAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIE
TFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYI
ELNAQGRARPSIAKLYNWRYRDLGDLPYVKEDAVFHRANAGFSYEYQLVDVPDYQGRGES
APSPWFYQNEGEAEYVVSVYMYLRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYDFI
GPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFE
QCYELQPTFQLLLQRPDCLALNLNEITSYTERHVEDTGPIHLVSGVEEMISIFNWRYQER
YMSHQFDHYMTYSGQNDQQNSTIGFNAMDTDTPSVQHESSMEEDTKIDADVLPASHSIGE
VDKEASRNDENDRLPESNSSEENMTD
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagtgtacggaaccggcgcgtacgatttcaagcggcacagggtggcggagtac
ccggtggatccaacgtcgtcgacgacgcagccggcggcggagaagccggtggagtctgcg
ctgccgagcacgattacgctgtcggagattcagcgggaccggctcacgaagatcgcggag
gataactggtcgaaagctgccggaggaggtaaagactccggcggtgagaagcggttcgat
ccggagctggtgaaggagatttacaagacggagttgctggtcaaaggagggagaaagcca
gtgccgttgcagagggtgatgattttggaggtgagtcagtatttggagaactacctctgg
cccaatttcgaccccgataccgcgtcgttcgagcacgtcatgtcgatgattctcatggtc
aatgagaagtttcgggagaatgtggcagcttgggtatgcttttatgatcgaaaagacatt
tttaagggattccttgagagggttcttcggctgaaggagggaatagaattaagcattgcc
gagaagacgaattacttggttttcatgatcaatgcctttcagagcttgggagatgaggtt
gtcagtgagactgtgttgagattagcaagtttgcaatcctggcacagtttgtcatatggt
cgttttcagatggagctttgtcttaatcaggaattgatcaagaaatggaaaagaatgata
aagagagaagctaaggaggcaacaaagcgaggagagctttttgacccgtcaactaagctt
gaagtgaaattcttgagaaatcttattgaagaatttctggaggtactggattcaacggtt
ttttcctgggaacaacatgttaatgaagataataaaataattgatgcttatggtttgaag
caagttgacgatgcttgtgttttgtactgtgagaggtttatggaatttcttattgatctc
ttgagccaactgccaacaaggaggtacctgagacctcttgttgctgatgtggctgttgtt
gccaagtgccatctgagtgcactctacaaacatgagaaggggaaactctttgcacaactg
gtcgacttgctgcagttctatgagaaatttgagattaatgatcatgttgggactcaactg
acagatgatgaggtgctgcagtctcattatgaccgcttccaatcttttcaactgcttgca
ttcaagaagatccccaagttgcgagaacttgcactggctaacattggtgcaattaacaag
cgggctgatctctctaagaagttgtctgagcttcctcctatggatttgagggatttggtt
tgccacaagctcaaactgatctcagaggaagatccctggtcggaaagggttgattttctt
attgaagtcatggtctccttttttgagaaacaacaatctcaaaaagaagccataaatgct
ctcccactctacccaaatgagcaaattatgtgggatgaaagccttgtaccaagcataaat
tactctggcgagggttgtctagctcttccaaaacttaatttacaattcttaacgcttcat
gattatcttctgcgaaattttaatctcttccgtcttgaatcaacatatgagatacgtgag
gatattcaggaagctgtaccacatctccttgcctacatcaataatgaaggagaaactgct
tttcgcggttggtcaagaatggctgtgccagttaaagaatttaagatcaccgaggtaaaa
cagccgaacattggagaagtcaagccgtcatctgttactgcagacgtgacttttagcatt
tccagttataaagcacaaataagatcagagtggaatgcccttaaagagcacgatgttctg
tttttactttcaattcgcccttcatttgagcctctaagtgctgaagaagctgccaaggca
agtgtgccacaaaggcttggacttcagtatgtgaggggatgtgagattattgaggttcgt
gatgaggagggaactctcatgaatgatttcacaggaagaattaaaagagatgagtggaag
cctccaaaaggggaactgagaactgtaactattgctttagatacagcgcaataccacatg
gatgtcagcaatattgcagagaaaggtgcagacgatgtttacgggacattcaatatattg
atgaggaggaagccaaaagaaaacaatttcaaagcaattttagagtctataagagatctt
atgaatgaatattgtattgttcctgattggctgcacaatgtatttttgggctatgggaat
ccttctgcagcacaatggactaacatgcctgatcttttggaaatggtagatttcaaagat
acttttcttgatgctgaccatttgaaagacagttttccggattatcaggtttgttttata
aatacagatggcagcgaaaacttgcagccgatgcctccttttcgaattaggcttcccaag
acgcagaaaggtggtagtcatgcacttactgggaataagatatctggtgttgattcagca
gatggtgtcaatatggaggatacactcattgtggaggcatacactcctcctgacccaggt
ccttatccccaagatcagccaaaacagaactcagttagatttacacctacacagattgga
gcaatcatctctggtattcagcctggactaactatggttgtgggtccacctggtacggga
aaaactgatacagctgtgcaaatcctgaatgtgctttatcacaattgtccttctcagcgg
acattgataatcacacattcaaatcaggctttgaatgacctttttgagaagataatgcag
agggatgtacccgcacgttatctactccgtcttgggcaaggagaacaagaactagcgact
gatctcgattttagtaggcaaggccgtgtgaatgcaatgcttgtccgacggttagaactg
cttggtgaagtggagaggttggctagatctcttcaactgcctgaggatgtaggttacacg
tgcgaaactgctggatatttctggttgcttcatgtatactcacgctgggaacaattcttg
gcggcttgtgctgagaatgaagataaaccaacatttgttaaagaccgctttcccttcaag
gaatttttctctgacactccgcatccaatttttatgggcgagtcttttgagaaagacatg
agagcagctaaggggtgctttcgtcatcttaagaccatgtttcaagagcttgaagagtgt
agggcatttgaattgctcaagtcaacggctgatcgagcaaattatctcatgaccaagcag
gcaaagattgttgcaatgacttgcactcatgcggcactcaagaggaaggattttcttcag
ctaggtttcaagtatgacaacttgttgatggaagaaagtgcccaaatattggagattgag
accttcatcccaatgttgctccagaggcaagaagatggttatgcacggcttaagcgctgc
atcctgattggtgatcatcaccagttgcctcctgttgtgaagaacatggctttccagaag
tatagccacatggatcagagtctatttacaaggtttgttcgtctcggcattccttatatt
gagctcaatgcccagggtagagccaggccaagtatagccaaactgtacaactggaggtac
agagatttgggtgaccttccttacgtaaaggaggatgctgtcttccatagagcaaatgct
ggattctcctatgagtatcagttagtggatgtgcccgattaccaaggtagaggtgaaagt
gccccttccccttggttttatcaaaacgagggagaagctgaatatgttgtcagtgtctat
atgtacttgcgtttacttgggtacccagcaaataagatatccatcttgacaacttacaat
ggccagaaacttttgatccgtgatgttatcaatagaagatgtgttccatatgacttcatt
ggtccacccagcaaggttacaactgttgataagtttcaaggtcagcaaaatgattttata
ttgctgtctcttgtgcgtactcgctttgttggtcaccttcgtgatgttagaagattggtt
gttgccatgtctcgtgcccgacttggtttgtatgtgttttgtcgccgttctctgttcgaa
caatgctatgaactgcagcctacatttcagcttctgcttcagagacctgattgccttgcc
cttaatctgaatgagatcacgtcatatacagaacgacatgttgaagacactggacctatc
catcttgtcagtggtgttgaggagatgatcagcatttttaattggaggtatcaggaacga
tacatgagtcatcaatttgatcattatatgacctactcgggacaaaacgatcaacaaaat
tcaacaattgggttcaatgccatggacactgacacaccttctgtgcaacatgaaagcagc
atggaagaggacactaagatagatgcggatgttctgcctgcgagtcattcaattggggag
gtagacaaggaagctagtagaaatgatgaaaatgataggctacctgaaagcaattcaagt
gaggaaaatatgacggattag
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integrated database retrieval system
