KEGG   Castanea sativa (European chestnut): 142618220
Entry
142618220         CDS       T11266                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
csaa  Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csaa03041]
    142618220
Spliceosome [BR:csaa03041]
 Complex B
  Other components
   Complex B specific factors
    142618220
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_Gbeta WD40_MABP1-WDR62_2nd LisH_TPL NBCH_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_ACSF4 Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_NWD2_C Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NUP159_NUP214 DUF7165 PROPPIN Beta-prop_WDR75_2nd Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 142618220
NCBI-ProteinID: XP_075647239
LinkDB
Position
12:complement(3336674..3347856)
AA seq 513 aa
MSFLEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSVETFIADINSGRWDAI
LPQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQAMGVMKQEQPERYLRLEH
LLVRTYFDANEAYQDSTKEKRRSQIAQALAAEVTVVPPSRLMVLIGQALKWQQNQGLLPP
GTQFDLFRGTAAMKQDVDDMYPTTLAHTMKFGTKNYPESARFSPDGQFLVSCSVDGFVEV
WDYISGKLKKDLQYQADERFMMHEDPVFCADFSRDSEMLATGSKEGKIKVWRIRTGQCLR
RLEHAHSGCVTSIVFSRDGSQLLSTSFDNTARIHGLKSGKMLKEFRGHSSCVNDAIFTTD
GNRVITASSDCTVKVWDMKTTDCLQTFKPPPPLRGGDASVNSVHLFPKNNDHIIVCNETS
SIYIMTLQGQVVKSFSSGKREGGDFVASCVSPKGDWIYCVGEDRNMYCFSYQSGKLDHLM
KVHEKGVTCVTHHPHRNLVATCSQDCTMKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgttcctcgaaatcgaagctcgagatgtgatcaagattgtgctccaattctgcaaa
gagaattctttgcaccaaacgttccagacgttacagagcgagtgccaggtttctttgaat
actgtggacagtgtggagacgtttattgctgatattaatagtgggaggtgggatgcgata
ctgcctcaagtatctcagctcaagcttcccaggaataaattggaggatttgtatgagcag
attgtattagaaatgattgaacttcgagaattggatactgcacgtgctattttaaggcaa
actcaggcaatgggtgtcatgaagcaagagcagcctgaaagatatttgcgacttgagcat
ctcctagtcagaacttactttgatgcgaatgaggcttaccaagattcaacaaaagaaaaa
cggcgttcacaaattgctcaagctcttgctgctgaagttactgtggtcccaccttcacga
ttaatggttctaattggccaggctctgaagtggcagcagaaccaaggattacttcctcca
ggaacacagttcgacttatttcgaggaaccgctgctatgaaacaagatgtggatgacatg
tatccaactactcttgcacacacaatgaagtttgggacaaaaaattacccagaatctgct
cgattctcgccagatggacagtttcttgtctcttgctctgttgatggctttgttgaggtc
tgggattacatcagtgggaagctcaagaaggatcttcagtaccaggctgatgaaaggttc
atgatgcatgaggatccagtgttttgtgctgattttagcagagattctgagatgcttgca
actgggtcaaaagaaggaaagataaaagtttggcgtataaggactggccaatgcttgcgt
cgtcttgaacatgcacattctggatgtgtcacaagtattgtcttctctcgagatggaagc
cagttactaagtacatcatttgacaacactgcaagaatccatggcttgaaatctgggaag
atgttgaaagaattccgtggccattcatcttgcgtcaatgatgctatttttacaactgat
ggaaatcgtgttatcactgcatctagtgattgcacagtaaaggtctgggatatgaagact
acggactgtctgcaaacatttaagccaccgcctcccttacggggaggtgatgcttctgtg
aattctgttcatcttttccccaaaaataatgatcacattattgtatgtaatgagacatcg
tctatatatattatgacacttcaagggcaggttgtaaagagcttctcatctggtaaaaga
gaaggtggagactttgttgcatcctgtgtgtcaccaaaaggggactggatttactgtgtt
ggtgaagacaggaatatgtactgtttcagctatcaatctggtaaactggaccatctgatg
aaggtccatgaaaagggtgtaacttgcgtcactcatcatccacacaggaatcttgttgct
acatgcagtcaagactgcactatgaaattgtggaagccttga

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