KEGG   Castanea sativa (European chestnut): 142618636
Entry
142618636         CDS       T11266                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03030  DNA replication
csaa03410  Base excision repair
csaa03420  Nucleotide excision repair
csaa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    142618636
   03410 Base excision repair
    142618636
   03420 Nucleotide excision repair
    142618636
   03430 Mismatch repair
    142618636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csaa03032]
    142618636
   03036 Chromosome and associated proteins [BR:csaa03036]
    142618636
   03400 DNA repair and recombination proteins [BR:csaa03400]
    142618636
DNA replication proteins [BR:csaa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    142618636
  DNA Replication Termination Factors
   ELG1-RFC complex
    142618636
Chromosome and associated proteins [BR:csaa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    142618636
DNA repair and recombination proteins [BR:csaa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     142618636
  Check point factors
   HRAD17(Rad24)-RFC complex
    142618636
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_lid_RFC1 RCF1-5-like_lid AAA_22 AAA_assoc_2 AAA_16 AAA_11 AAA_5 AAA_14 ATPase_2 nSTAND_NTPase5 DNAX_ATPase_lid AAA_24 AAA_30 DUF815 AAA_7 RuvB_N ResIII AAA_2 AAA_19 bpMoxR nSTAND3 AAA_3 TniB SLFN-g3_helicase AAA_28 Mg_chelatase TIP49 nSTAND6
Other DBs
NCBI-GeneID: 142618636
NCBI-ProteinID: XP_075647700
LinkDB
Position
12:complement(29649086..29654503)
AA seq 415 aa
MIGAIHLYWPKEPRFVTVSHTLPLPLPLLHSQKKKKKHSPQIQQRHKIIIMTEVISLMDI
DDDDNNNNKLNNNSNSNNKGKNVVVPGEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLT
SENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA
STQSFSFGAKASVKLILLDEADAMTKDAQFALRRVIEKYTRNTRFALICNHVNKIIPALQ
SRCTRFRFAPLDSFHVTERLKHVIEAEKLDVPETGLAALVRLSNGDMRKALNILQSTHMA
SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFTESFKRISEMKTRKGLALVDIVREVTM
FVFKIKMPSDIRVQLINDMADIEYRLSLACNDRLQLGSLIASFTRARSALVAAAN
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgattggcgccattcatttgtattggccaaaagaaccccgctttgtcaccgtctcacac
acactcccactcccacttcctcttcttcactctcaaaaaaagaagaagaaacacagcccc
caaatccaacaacgccataaaattatcatcatgacggaggtaatttctctcatggacatt
gacgacgacgacaacaacaacaacaagcttaacaacaacagcaacagcaacaacaagggc
aaaaacgtcgtcgtccctggcgaacccaaagccactccctgggtcgagaagtaccgccct
cagtccctcgctgacgtggctgctcaccgcgacattgtcgataccattgataggctgacg
agcgagaacagattgccccatcttctattgtatggaccacctggcacgggtaaaacgtcg
actatccttgctgtggcgcgcaagctttatggagcgcaataccacaatatgattctggag
ctcaatgcatccgacgataggggaattgatgttgtgagacaacaaatccaagattttgca
agcactcaaagcttctcatttggtgcaaaggcatctgtaaagttgatcttactagatgag
gctgatgctatgacgaaggatgcacaatttgccttgcgtagagtgattgaaaaatacaca
aggaacactaggtttgcacttatttgcaatcatgtcaacaagattattcctgcactacag
tcaagatgtactcggtttcgttttgctcctcttgattcttttcatgtaactgagcgactc
aaacatgttatagaagctgaaaagcttgatgtacccgaaactggcttagcggcactcgtg
cgacttagcaatggtgatatgagaaaggctctgaatattttgcagtcaacacatatggct
tctcagcagataacagaagaggctgtatacttgtgcactggaaatccattgcccaaagac
attgagcagatatcatactggcttttgaatgaatcttttacagagagcttcaaacgaata
tctgaaatgaagacaaggaaaggattggccttggtagatattgtgagagaggtgacaatg
tttgttttcaagatcaaaatgccatcggatattcgagttcagttaattaatgatatggct
gatatagagtacaggttgagtcttgcgtgcaatgataggttgcaacttggatcgcttatt
gcttcttttacacgagcccgctctgcactggttgctgctgcaaattaa

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