Castanea sativa (European chestnut): 142619534
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Entry
142619534 CDS
T11266
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142619534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142619534
03036 Chromosome and associated proteins [BR:
csaa03036
]
142619534
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
142619534
Coactivators
SAGA/TFTC/STAGA complex
142619534
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
142619534
STAGA complex
142619534
TFTC complex
142619534
SAGA complex
142619534
SLIK complex
142619534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Cytochrom_D1
LisH_PAC1
PALB2_WD40
Dimer_MINDY4_N
LisH
Motif
Other DBs
NCBI-GeneID:
142619534
NCBI-ProteinID:
XP_075648782
LinkDB
All DBs
Position
1:19487627..19508254
Genome browser
AA seq
676 aa
AA seq
DB search
MEEDQLEKFVVAYLKKKGFKQAEHAFQEELQQHQSKNNSSSSISTNSITDPDFAKHLLSF
PELENVPARYQDGYSKLRSWTYSSLDLYKHELIRVLYPVFIHCFMDLVVKGHIQEARTFF
NSFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHSLRHNKVKIKICQYSYDLLLQYLHKT
QLTIMLGIINEHINFQVSPGQPISISDDAEVVTLIGSSQDEATQINQKEIHWGLLEDSLE
ERLEKSGVLLSDSEKAEGETKEGELDENKKRSVEGGKQGSSTKKLKKDKAASATGKTGRP
EVNAVITAPRVKPELALPVISTEVEKSILEDLRNRVQLSSVSLPSVNFYTFINTHNGLNC
SSISHDGSLVAGGFSDSSLKVWDMAKLGQEAVGSVLQGENDTTSSEHVLGSNGGKRSYTL
FQGHSGPVYSATFSPLGDFLLSSSADSTVRLWSTTMNANLVCYKGHNYPVWDVQFSPLGH
YFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQS
GECVRIFIGHRSMVLSLAMSSDGRYMASGDEDGAIMMWDLSSGRCVTPLMGHTSCVWSLA
FSCEGSLLASGSADCTVKLWDVTASTKVPRTEENKSGNTNRLRSLRTLPTKSSPIYALRF
SRRNLLFAAGVLSKSV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatcaattagagaaattcgtggtagcgtatttgaagaagaaagggtttaag
caagctgagcacgctttccaagaagaacttcaacaacatcagagcaagaacaattcttca
tcttccatctccaccaactccatcactgaccctgacttcgccaagcaccttctctcattc
cccgaattggagaatgttccagcacgatatcaggatggatatagcaaactaaggtcttgg
acttatagttcactagatttatacaagcatgagttgattcgtgtgctttatcctgtattt
attcattgtttcatggatctggtggtgaaagggcatattcaagaagctcgaacctttttc
aatagcttccgtgaagaccatgaaatgatgcactcacgagaccttcaaaagttggaagga
gttctttctccctctcatctggaggagatggaatttgctcattctcttaggcacaacaaa
gtcaaaataaagatatgtcagtactcctatgaccttctgctgcagtatctacacaagaca
caattgaccataatgcttgggattataaatgagcatattaactttcaagtttctccagga
cagcccatctcaatctctgatgatgccgaagttgttacacttattggaagtagccaggat
gaggccactcagataaatcagaaggaaatacattgggggctgcttgaagattctttagaa
gaacgcttggaaaagagcggggtcttgctttcagattcggaaaaggctgaaggtgaaaca
aaagagggggaattggatgagaataagaaaagatcagttgaaggaggaaagcaaggctcg
tcaacaaaaaagttaaagaaagacaaggctgcaagtgcaacggggaaaactgggcgtccg
gaggtcaatgctgtaattacggcaccacgagttaaaccagagcttgctttgccagtaatt
tcaacagaggtagaaaagtctattcttgaggacctaagaaaccgtgtacagttgagtagt
gtttcactgccatctgtcaacttctatacatttatcaacacacataatggcttaaactgt
tcatcaatatcccatgatggttctttggttgctggtggattttcagactcatcattgaag
gtttgggacatggcaaagcttggacaagaagctgttggttctgttttgcagggtgaaaat
gatactacttcaagtgaacatgttttagggtcaaatggcgggaaaagatcttatacatta
tttcagggtcattcgggcccagtttattctgccacttttagccctcttggggatttttta
ctttcctcttcagcagactcgacagttcggttatggagcactacaatgaatgcaaatctt
gtctgctacaaaggccataattatcctgtatgggatgttcagtttagtcctctaggacat
tattttgccagcgcttcacatgatcgaacagcaaggatttggtccatggacagaatacag
cctttaagaataatggcagggcacttatctgatgtcgattgtgttcaatggcatgtcaac
tgcaactacattgccactggctctagtgataaaacagtccgattgtgggatgtacaaagt
ggggagtgtgtccgaatatttattggtcacaggagtatggttttgtctttggcaatgtca
tctgatggtcggtatatggcctctggtgatgaagatggagcaatcatgatgtgggatctc
tcaagcggtcgctgtgtcacacctttaatgggtcacacctcatgtgtatggtcacttgct
ttcagttgtgaaggctcacttcttgcatctgggtctgctgattgcactgtaaaattatgg
gatgtaactgcaagtacgaaggtgccaagaactgaagaaaacaaaagtggaaatacaaac
cgactaagatcgttgagaacgcttccaaccaagtctagccccatctatgcattgcggttt
tctcgaagaaatcttctttttgcagctggagtcctttcaaaaagtgtataa
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