Castanea sativa (European chestnut): 142619534
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Entry
142619534 CDS
T11266
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142619534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142619534
03036 Chromosome and associated proteins [BR:
csaa03036
]
142619534
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
142619534
Coactivators
SAGA/TFTC/STAGA complex
142619534
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
142619534
STAGA complex
142619534
TFTC complex
142619534
SAGA complex
142619534
SLIK complex
142619534
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
DSE1_N
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
PAC11
Beta-prop_WDR75_1st
CFAP251_N
Beta-prop_WDR41
ASA1
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
LisH_SSDP
Cytochrom_D1
SHKBP1_KCTD3_C
LisH_PAC1
PALB2_WD40
Dimer_MINDY4_N
LisH
Motif
Other DBs
NCBI-GeneID:
142619534
NCBI-ProteinID:
XP_075648782
LinkDB
All DBs
Position
1
Genome browser
AA seq
676 aa
AA seq
DB search
MEEDQLEKFVVAYLKKKGFKQAEHAFQEELQQHQSKNNSSSSISTNSITDPDFAKHLLSF
PELENVPARYQDGYSKLRSWTYSSLDLYKHELIRVLYPVFIHCFMDLVVKGHIQEARTFF
NSFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHSLRHNKVKIKICQYSYDLLLQYLHKT
QLTIMLGIINEHINFQVSPGQPISISDDAEVVTLIGSSQDEATQINQKEIHWGLLEDSLE
ERLEKSGVLLSDSEKAEGETKEGELDENKKRSVEGGKQGSSTKKLKKDKAASATGKTGRP
EVNAVITAPRVKPELALPVISTEVEKSILEDLRNRVQLSSVSLPSVNFYTFINTHNGLNC
SSISHDGSLVAGGFSDSSLKVWDMAKLGQEAVGSVLQGENDTTSSEHVLGSNGGKRSYTL
FQGHSGPVYSATFSPLGDFLLSSSADSTVRLWSTTMNANLVCYKGHNYPVWDVQFSPLGH
YFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQS
GECVRIFIGHRSMVLSLAMSSDGRYMASGDEDGAIMMWDLSSGRCVTPLMGHTSCVWSLA
FSCEGSLLASGSADCTVKLWDVTASTKVPRTEENKSGNTNRLRSLRTLPTKSSPIYALRF
SRRNLLFAAGVLSKSV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatcaattagagaaattcgtggtagcgtatttgaagaagaaagggtttaag
caagctgagcacgctttccaagaagaacttcaacaacatcagagcaagaacaattcttca
tcttccatctccaccaactccatcactgaccctgacttcgccaagcaccttctctcattc
cccgaattggagaatgttccagcacgatatcaggatggatatagcaaactaaggtcttgg
acttatagttcactagatttatacaagcatgagttgattcgtgtgctttatcctgtattt
attcattgtttcatggatctggtggtgaaagggcatattcaagaagctcgaacctttttc
aatagcttccgtgaagaccatgaaatgatgcactcacgagaccttcaaaagttggaagga
gttctttctccctctcatctggaggagatggaatttgctcattctcttaggcacaacaaa
gtcaaaataaagatatgtcagtactcctatgaccttctgctgcagtatctacacaagaca
caattgaccataatgcttgggattataaatgagcatattaactttcaagtttctccagga
cagcccatctcaatctctgatgatgccgaagttgttacacttattggaagtagccaggat
gaggccactcagataaatcagaaggaaatacattgggggctgcttgaagattctttagaa
gaacgcttggaaaagagcggggtcttgctttcagattcggaaaaggctgaaggtgaaaca
aaagagggggaattggatgagaataagaaaagatcagttgaaggaggaaagcaaggctcg
tcaacaaaaaagttaaagaaagacaaggctgcaagtgcaacggggaaaactgggcgtccg
gaggtcaatgctgtaattacggcaccacgagttaaaccagagcttgctttgccagtaatt
tcaacagaggtagaaaagtctattcttgaggacctaagaaaccgtgtacagttgagtagt
gtttcactgccatctgtcaacttctatacatttatcaacacacataatggcttaaactgt
tcatcaatatcccatgatggttctttggttgctggtggattttcagactcatcattgaag
gtttgggacatggcaaagcttggacaagaagctgttggttctgttttgcagggtgaaaat
gatactacttcaagtgaacatgttttagggtcaaatggcgggaaaagatcttatacatta
tttcagggtcattcgggcccagtttattctgccacttttagccctcttggggatttttta
ctttcctcttcagcagactcgacagttcggttatggagcactacaatgaatgcaaatctt
gtctgctacaaaggccataattatcctgtatgggatgttcagtttagtcctctaggacat
tattttgccagcgcttcacatgatcgaacagcaaggatttggtccatggacagaatacag
cctttaagaataatggcagggcacttatctgatgtcgattgtgttcaatggcatgtcaac
tgcaactacattgccactggctctagtgataaaacagtccgattgtgggatgtacaaagt
ggggagtgtgtccgaatatttattggtcacaggagtatggttttgtctttggcaatgtca
tctgatggtcggtatatggcctctggtgatgaagatggagcaatcatgatgtgggatctc
tcaagcggtcgctgtgtcacacctttaatgggtcacacctcatgtgtatggtcacttgct
ttcagttgtgaaggctcacttcttgcatctgggtctgctgattgcactgtaaaattatgg
gatgtaactgcaagtacgaaggtgccaagaactgaagaaaacaaaagtggaaatacaaac
cgactaagatcgttgagaacgcttccaaccaagtctagccccatctatgcattgcggttt
tctcgaagaaatcttctttttgcagctggagtcctttcaaaaagtgtataa
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integrated database retrieval system
