Castanea sativa (European chestnut): 142619762
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Entry
142619762 CDS
T11266
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
csaa
Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csaa04121
]
142619762
Ubiquitin system [BR:
csaa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
142619762
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EIPR1
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_HPS5
TRM82_WD
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_Aladin
TPR_2
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
DUF7353
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_WDR41
CNOT10_TPR
Rapsyn_N
Motif
Other DBs
NCBI-GeneID:
142619762
NCBI-ProteinID:
XP_075649148
LinkDB
All DBs
Position
12:complement(15773850..15789257)
Genome browser
AA seq
773 aa
AA seq
DB search
MESFGFHDGNIYDFLENRHYNVRQDVNHNLQMHSSLVRRLSLEKVMEGHQGCVNAVAWNS
KGSLLISGSDDTRLNIWSYYSRTLLHSIETGHSANIFCTKFVPETSDELVASGAGDAEVR
LFNLSRLSGRGPDDNAITPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG
TSCPPAGSSHQECRNVLLDLRSGAKRSLSDPPKQVLALKSFDISSTRPHLLLVGGSDAFA
RLYDRRMLPPLTSCRKRMSPPPCVNYFCPMHLSDRGRQSLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNNAGRSAMQYTPGDVSKLMSFTPILNGVELQPPVSNVFPSRLPRKNNVSATR
EKCRKLIQVAEKCLEEATNYFYGIEACSEVLDGYVHDIGPMLKHECLCLRAALLLQVIPQ
KKRKKRKRKWKNDAHMAVRDCYNARRIDNSSFQAHYYMSEALSQLGKHKEALEFALAAQI
LSPSNSKAVDRVDNVKRDLAAVEAEKNKANDGLPRSESRGGRVLSLSDILYRSEANSDAS
QDGPRSEREDSDYDEEVELDFETSISGDEGRDVESNILHGSLNVRFHRRGDSGRESVGAN
GICGSPSSSSQNDRIPYLPEVAIDMKQRYVGHCNVGTDIKQASFLGQKGEFVASGSDDGR
WFIWEKRTGRLIKMLLGDDAVVNCVQCHPFDSVVATSGIDNTIKIWTPTAPVPSIVAGGA
ESPETADALVAMENNQRKLSRNREAILPFEIFERFRMHEFSEGTFHPFECTQS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgttcggttttcacgacggcaacatctacgatttcctcgagaatcgtcactac
aacgttcgccaagatgttaaccacaatttgcagatgcactcatcattggtacgaaggctc
tcccttgaaaaagtgatggagggacatcaaggttgtgttaatgctgtggcatggaattcc
aaaggttcgcttttgatatctggatcagatgacacaaggcttaatatttggagctattat
agtcggacgcttttgcattctatagagactgggcattctgcaaacatattctgtacgaag
tttgtgcctgaaacctctgatgagcttgttgcctctggagctggagatgcagaagtgcgg
ctatttaatttgtctcgcttaagtgggagaggacctgatgataatgctatcactccgtca
gcattgtatcagtgtcacactagaagagtaaaaaaattagctgttgaagttggaaacccc
aatgtggtatggagtgctagtgaagatgggactttgagacagcatgactttcgagaaggc
acatcttgtcctccagctggatcttctcatcaagaatgtcgcaatgttctacttgatttg
cggagtggagcaaagaggtcactttctgatcctcctaaacaagttcttgctctaaaatct
tttgatatcagttccactaggcctcatttgctccttgttggtgggagtgatgcatttgca
cgtttatatgatagaaggatgctgccgccactgacctcttgtaggaaaaggatgtcacca
cctccttgtgttaactatttctgcccaatgcatctctctgaccgtgggcgtcaaagcttg
cacctcactcatgttacatttagtccaaatggagaagaggttctccttagttatagtgga
gagcatgtgtacctgatggatgtaaataatgcaggcaggagtgctatgcaatatactcca
ggtgacgtttcaaagttgatgagcttcactcctatactcaacggggtagaattgcagccg
ccagtgtccaatgtcttcccaagtcgccttcctaggaaaaacaatgtttctgccacgaga
gaaaagtgcaggaaactaattcaagttgcggaaaaatgcttagaggaggcaacaaattat
ttctatggcattgaggcatgtagtgaggttttggatggatatgttcatgacattgggcct
atgctaaagcatgaatgtctatgtctacgtgctgctttgttgctccaggttattcctcag
aaaaaaagaaaaaaaagaaagaggaagtggaaaaatgatgctcatatggccgtaagagat
tgttacaatgctagaagaattgataattcctcttttcaagcacattactatatgtctgaa
gctttatcgcagttaggcaaacataaagaggctctagaatttgcccttgcagctcaaatt
ttgtccccatccaattctaaagcggtagacagagtggacaatgtcaaaagggatcttgct
gcagttgaagctgaaaaaaataaagcaaatgatggattgccaaggtctgaatcaagaggt
ggaagagtactctccttaagtgatatactctaccgttcagaagctaatagtgatgcttcg
caagatggtccaagatctgaaagagaagattctgattatgatgaggaagtggagttggac
tttgaaacttcaatatcaggtgatgaaggacgtgatgttgaatcaaacattcttcatggg
agtttaaatgtgagatttcatcgaagaggtgattcaggtagagaaagtgttggtgcaaat
ggcatatgtggatcaccttcatcatcgtcgcaaaatgacaggataccttatctgcctgag
gtagctattgatatgaagcagagatatgttggccactgtaatgttggaactgacataaag
caggccagttttcttggccagaaaggtgagtttgttgctagtggaagcgatgatggaaga
tggtttatctgggaaaagcgaactggtagactgataaaaatgcttctgggagatgatgct
gttgtgaactgcgtccaatgccacccatttgattctgttgtggcaactagtgggattgat
aacacaataaagatatggactccaaccgctcctgtcccatcaattgtagcaggtggggca
gaaagtccagaaactgctgatgctctggttgccatggaaaacaatcaacgaaaattatcc
cgtaaccgtgaagctatactgccttttgaaatctttgagcggtttcggatgcatgaattt
agtgaaggaacatttcatccgtttgagtgtacacaaagctaa
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