Castanea sativa (European chestnut): 142619828
Help
Entry
142619828 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142619828 isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
142619828
Enzymes [BR:
csaa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
142619828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
HGWP
Motif
Other DBs
NCBI-GeneID:
142619828
NCBI-ProteinID:
XP_075649241
LinkDB
All DBs
Position
12:complement(17322783..17330135)
Genome browser
AA seq
606 aa
AA seq
DB search
MSPGVQLHIEKSHVVMDNGILKVKLSKPDGIVTGIKYNGIDNLLEVLNEEVNRGYWDLVW
SEAGSTGTTGTSDVIKGTSFRVIKESKKQVEISFTRLWDPSLQGKSVPLNIDKRFQYMAM
ADNRQRYMPLPDDRLPGRGKPLATPEAVLLVNPIEPEFKGEVDDKYQYSCENKDLRVHGW
ICMDPLVGFWQITPSSEFRSGGPIKQNLTSHVGPVNLAMFLSAHYAGEDLVLKLNPDEPW
KKVFGPIFMYLNSVTDGNDPLYLWEDAKNQMMIEVESWPYNFPASDDFPTADQRGSVSGR
LQIQDWFLSDECISANCAYVGLAPPGDVGSWQRECKGYQFWTTADADGYFSINNIRCGSY
NLYAWVPGVIGDYQYDDFITINAGCDIDLGYLVFEPPRDGPTLWEIGTPDRTAAEFYIPD
PDPKYINKLYINHPDRYRQYGLWERYADLYPDEDLVYTVGVSDYKKDWFFAQVTRKLSDD
TYQGTTWQIKFKLDLVDTNGSYTLRLALATAHISELQVRVNDPKTSPPLFSTGVIGHDNT
IARHGIHGLYRLYNIEVPFTQLVDGHNTIFLTQTMASGDFPALQGIMYDYIRFEGPSSSY
SKKKTN
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaggggtacaattgcatattgagaagagtcatgtggtgatggataatggcata
ctaaaagtaaaattatcaaagccagatggaatcgttacagggataaaatataatggcata
gacaatttacttgaagttcttaatgaggaggtcaatagagggtactgggaccttgtatgg
agtgaagcaggaagtacaggaacaacgggtacatctgatgtgattaaaggaacaagtttt
agggttataaaggaaagtaagaagcaagtagagatctcattcacaaggttgtgggatccc
tcgctacaaggcaagtccgtccccttaaatatagacaaaaggtttcaatatatggcaatg
gccgataacaggcaaagatacatgcctcttccagatgatcgcttaccaggaagaggcaag
cctctagctaccccagaagcagtcttacttgttaatcctatagagccagagttcaaaggg
gaggtggatgacaagtaccaatattcgtgtgagaacaaagatcttcgggtccatggatgg
atttgcatggacccactcgttgggttctggcaaatcacacctagcagtgagtttcgatcg
ggtggacccatcaaacaaaacctgacttcccatgtggggcctgtcaaccttgctatgttt
ctcagtgctcactatgcaggagaggatcttgtgctgaaactcaatcccgatgagccatgg
aagaaagtattcggccctatctttatgtatcttaattctgtcacagatggaaatgaccca
ctttatctttgggaggatgctaaaaatcaaatgatgattgaagttgaaagttggccatac
aatttcccagcttctgatgattttccaactgctgatcaaaggggtagtgttagtggcaga
ttacaaatccaagattggtttttaagtgatgagtgcatttctgcaaactgtgcttatgtg
ggactggcaccacctggagatgttggatcctggcaaagagaatgcaagggttatcaattt
tggaccacagcagatgcagatggctacttctccatcaataacataagatgtggcagctat
aatctttatgcatgggttcctggtgtcattggtgattatcaatatgatgatttcattacc
attaacgcaggttgtgatattgatttgggttatcttgtatttgagccaccaagagatggc
ccaacactgtgggaaataggcaccccagatcgcactgctgctgagttttacattcctgat
cctgatccaaagtatattaacaaactttatatcaatcatcctgacaggtataggcagtat
ggactttgggaaagatatgcagatttatatcctgatgaagatttggtttacacagtgggt
gttagtgactataaaaaagattggttttttgctcaagttaccagaaaattaagcgatgac
acatatcaaggaactacatggcaaattaagttcaaacttgacctagtggatacaaatgga
tcctatacactgcgattggcacttgcaacagcccatatatctgaattacaggttcgagtt
aacgatccaaaaacaagtcctcccctattctcaactggagtaattggtcatgacaacaca
attgctagacatggaattcatggactctatcggctgtacaacatagaagtaccattcact
cagcttgtggatgggcataataccattttcttgacacaaacaatggcctccggcgatttt
ccagctttgcaagggattatgtatgactatattcgttttgaaggcccatcatcctcttat
tccaagaaaaaaacaaactag
DBGET
integrated database retrieval system
