Castanea sativa (European chestnut): 142619829
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Entry
142619829 CDS
T11266
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142619829
03015 mRNA surveillance pathway
142619829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142619829
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142619829
mRNA cycle factors
P-body specific factors
142619829
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
142619829
NCBI-ProteinID:
XP_075649243
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All DBs
Position
12:3883906..3892221
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AA seq
529 aa
AA seq
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MKEPSEKTKVVVRHLPPSLTHSDLSINIDEKFSGRYNWFFFRPGKYSLKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGAQYKVLVEYAPSQKAPKSATKKDGREGTIYKVDPDYL
EFLKIIAKPAEHLPSAEIQLERKEAEQAGAAKEAPIVTPLMEYIRQKRAIESGVQGSSVG
GKIRRRTGAASTSKPGSSNTKRSSEKKKYILKESAKNTTQKDKSNFIVVARREDQATTSS
GKEIYDVTGSVSGIPLTADSVKKKYLLLKGKDRGVSNVPEGLLQQGVTSPAGNSPSSTAP
KENQRREAGGRLIRNILSNSDARHSQSSTAVQPHQKIQILNSESGKRPPRPVNARLGPNG
LVAKNETNSFGSEGETKRTADDKFTKKDLQGLGNVSEKQEKRTRNRDRPDRGVWTPLRRS
DVSHASDENLSSSMLHPTQSQCDSVEVSRGEMKDMSYGSRNAEATATMSGRNNSVENGSQ
RHFGRRGAAHITKDDGSVNMSEGKSSRRGVSGHSAHEKQVWVQKSSSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagccatcggagaagacgaaggtggtggtacggcacctccctccatcgctcacg
cactccgatctctccatcaacatagacgaaaaattctccggccgctataactggttcttt
ttccgtcccggaaaatacagcctgaagaatcagaggtattctcgagcctacatagacttc
aagaggcctgaagatgttttcgagtttgcagagttttttgatggacatgtttttgttaat
gagaagggtgctcagtataaggttttagttgaatatgctccttcacagaaggctccaaag
tcagctactaagaaggatggtcgtgaagggaccatatacaaagtagatcctgattatcta
gagttcctcaaaattattgcaaagccggctgagcatctacctagtgcagaaatacagttg
gaaagaaaagaagcagagcaagctggtgctgcaaaagaagctcctattgttacgccactt
atggaatatattcgtcagaaacgagccattgagagtggagtccagggttcatcagttggt
ggcaagattaggagaagaactggggctgcatccacgagcaagcctggctcatctaatacc
aaacgaagctctgagaagaaaaagtatatattgaaggaaagtgccaagaataccactcaa
aaggacaagtcaaatttcattgtagtggctaggcgagaggatcaagcaactacttcaagt
gggaaagaaatatatgatgtgacaggttctgtttctggaatccctttgactgctgactct
gtaaagaagaagtatctgcttctaaaagggaaagaccgaggagtatctaatgttcccgag
ggtttgttacaacagggtgtaacatcgccggctggtaattctccatcttcaactgcgcca
aaagagaatcagaggcgggaggctggtgggaggttgattagaaacatactttcaaatagt
gatgctcgtcatagtcaatcttcaacagcagttcagcctcatcagaaaattcaaatcttg
aattcagaaagtggtaagcgaccaccacggccagtcaatgcacgcttagggccgaatggt
cttgtagctaaaaatgaaacaaactcctttggttctgaaggggaaacaaaaaggactgca
gacgataagtttacaaaaaaggacttgcaaggtttgggtaatgtcagtgagaagcaagaa
aaacgtacaagaaacagggatagacctgatcgtggtgtttggactcctcttcgtcgatct
gatgtttcacatgcgagtgatgagaacttgtcatcctccatgttgcatcctactcaatca
caatgtgattcagttgaagtttcccgtggagaaatgaaagatatgtcttatggaagtagg
aatgcagaggctacagccactatgagtggacgtaataattctgttgagaatggatcccaa
agacattttggccgtcgtggagctgcccacataacgaaggatgatggctctgttaatatg
agtgaggggaaatcttctagaagaggtgttagtggccatagtgctcatgagaaacaagtt
tgggtgcagaagtcatcttcaggttcttag
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