Castanea sativa (European chestnut): 142619986
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Entry
142619986 CDS
T11266
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142619986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142619986
03041 Spliceosome [BR:
csaa03041
]
142619986
03009 Ribosome biogenesis [BR:
csaa03009
]
142619986
03016 Transfer RNA biogenesis [BR:
csaa03016
]
142619986
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142619986
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142619986
Spliceosome [BR:
csaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142619986
Complex C
U4/U6.U5 tri-SnRNP related factors
142619986
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
Pre-60S particles
Helicases
142619986
Transfer RNA biogenesis [BR:
csaa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142619986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
142619986
NCBI-ProteinID:
XP_075649528
LinkDB
All DBs
Position
1:60803092..60819070
Genome browser
AA seq
998 aa
AA seq
DB search
MGSLKRKSTDDTAAEPPPKQKQRENDSPLPSANNDEEPVACLHDVSYPEGYVPPPPPPPP
SSSASAPAKEFPFTLDPFQSESINCLENGESVMVSAHTSAGKTVVALYAIAMSLRNKQRV
IYTSPIKALSNQKYREFKQEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITRE
VAWIIFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHQQPCH
IVYTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFHEDSFQKGLNSLVPASEGDKKKENGKW
QKGLAMGRGGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDEKVN
IETIFWSAMDILSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDRRGICILML
DDKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIP
SLEKEAKDLEEERDSIVIEEEDSLKNYYDLLQQYKSLRKDVRDILFSPRYCLPFLQASRL
VCIQCYKSEEASPSFSIKDEVTWGVILNFERVKTASEDDANRKPEDADYTVDVLTRCVVS
KDGIGKKTIKIVPFKEPGEPVVVSVPLSQIISLSSLKLFTIPKDLLPLEARENTLKKVSE
VLSRFAEKGVPLLDPEEDMKIQSSSYKKAARRIEALESLFDKHEVAKSPLIEQKLKVLHT
KHELTAKIKAIKKSIRSSTVLAFKDELKARKRVLRRLGYATSDDVVELKGRVASEISSAD
ELTLTELMFNGVLKDVTVEEMVSLLSCFVWQEKLQNATKPREELELLFAQLQDTARKVAK
VQLECKVQIDAESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEIL
QQLIQAAKSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgttgaagagaaaatcgacggacgacacagcagcggaacctccgcccaaacaa
aagcagagagaaaacgactcgccgcttccctccgccaacaatgacgaagaacccgttgct
tgcttacacgacgtgtcgtatccggaaggctatgttcctcctcctcctcctcctccccct
tcctcttcggcttcggcgccggcgaaagagtttcctttcactttagaccctttccagtcc
gaatccatcaactgccttgaaaacggcgagtccgtcatggtgtcagcccatacttctgct
gggaaaactgtggtagcattgtatgctattgctatgtcgttgcgaaataagcagagggtc
atatacacttcaccaatcaaggcgctcagcaaccaaaaatatagggagttcaaacaagag
ttttcagatgttgggttgatgacaggtgatgtgacaattgagccgaatgcttcttgcttg
gtgatgactacagaaatttggcgtagtatgcagtacaaagggtcggagattacgcgagag
gttgcttggattatttttgatgaagtacattacatgcgtgaccgggaaagaggtgtagtt
tgggaggaaagcatagttatggccccaaagaaatctcgatttgtattcctatcagcaact
gtacctaatgcaaaggaatttgctgattgggttgcgaaggttcaccaacaaccatgtcac
attgtttatacagattataggccaacacctcttcagcattatattttcccttctggaggt
gatggtctttacttggtggtggatgaaaagggaaaattccatgaggatagctttcagaaa
ggtttaaactcacttgtacctgctagtgagggtgacaagaaaaaggagaatgggaagtgg
caaaagggattagctatgggcagaggtggtgaagaaagtgacatcttcaagatggtgaaa
atgatcattcagcgtcaatatgatcccgtcatacttttcagctttagcaaaagagaatgc
gaatttcttgcaatgcagatggcaaaattggacctgaatggggatgatgagaaggtgaac
atagaaaccatcttttggagtgccatggatattctttcagatgatgataagaagctgcct
caggtttcaaatattttacccctcttgaaacgtggaataggtgtgcatcattctggcttg
cttcccattttgaaggaagttattgagatactatttcaagaaggactaatcaagtgtttg
tttgccacagagaccttcagcataggtttgaacatgcctgcaaaaactgttgtgtttaca
aatgtccgtaaatttgatggagataaattcagatggctatctagtggagagtatatacag
atgagtggccgtgctggtcgtcgaggtattgataggcgtggaatatgtatccttatgctt
gatgataaattggaaccttctactgctaaaatgatgcttaaaggaagtgctgattgtttg
aacagtgccttccatttaagctacaatatgcttttgaatcaaatgcgttgtgaagatgga
gatcctgaaaatttgcttcgtaattcattctatcagttccaagctgaccgtgccattcct
agtcttgagaaagaagcaaaggatcttgaagaagagagggattcaattgtaattgaagaa
gaagatagtttgaaaaattattatgatctgctacagcagtacaagagcttgaggaaggat
gttcgtgatattttgttttctccaaggtactgcttgcctttcttgcaggctagcaggctt
gtatgtattcaatgctataagagtgaagaagcttccccatctttctctatcaaggatgag
gtcacatggggagtaatattaaattttgaaagagtgaaaactgcatctgaagatgatgca
aataggaagccagaagatgcagactacacagtggatgttcttacaagatgtgtggtgagc
aaagatggaattgggaaaaaaaccattaagattgttccatttaaagagcccggagaacct
gttgttgtttctgttcctctatctcagattattagtttgagtagtcttaaattgttcact
ataccaaaagatcttttgcccttggaagctcgagaaaacacgctgaagaaggtttctgaa
gttctttctagatttgctgaaaaaggggtgccccttctagatccagaagaagatatgaag
attcaaagtagctcatacaaaaaagcggctcgtagaatagaggctttagagagccttttt
gacaagcatgaagttgctaaatctccccttattgaacaaaagcttaaagttttacacaca
aagcatgaattgacagcaaagatcaaggcaattaagaagtcaatacgttcttccactgta
ttggcttttaaagatgaacttaaggcaagaaaacgggttcttcggaggctagggtatgcc
acaagcgatgatgttgtggagttgaaggggagagttgctagtgaaatcagtagtgcagat
gagttgacactgacagagctaatgttcaatggggttttaaaggacgttacagtggaagag
atggtttctctcctttcttgttttgtttggcaggagaaacttcaaaatgctacaaagcct
agggaagaacttgaattgctctttgcacaattacaagatacagctcgtaaggttgctaaa
gttcagcttgagtgcaaggtccaaattgatgctgagagctttgtgagttcatttcggcct
gatatcatggaggctgtgtatgcttgggcaaaaggatccaaattctatgagataatggaa
attacacaggtttttgagggcagtttgattcgggcaattcgtagactggaggaaattctt
cagcagctcatacaagcagcaaaatctattggagaaaccgagcttgaatcaaaatttgaa
gaggctgtctctaagatcaagagggatattgtctttgcagcatctctgtacttgtag
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