Castanea sativa (European chestnut): 142620004
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Entry
142620004 CDS
T11266
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142620004
09123 Folding, sorting and degradation
03018 RNA degradation
142620004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142620004
03041 Spliceosome [BR:
csaa03041
]
142620004
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142620004
mRNA degradation factors
5'-3' decay
Lsm complex
142620004
Spliceosome [BR:
csaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142620004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
142620004
NCBI-ProteinID:
XP_075649550
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Position
12:7145840..7153137
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AA seq
87 aa
AA seq
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MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatccttcacaactgctcccatcagagctaattgataggtgcatagggtcg
aagatatgggtgataatgaagggagacaaggagcttgttggcactcttaggggctttgat
gtctatgtcaacatggtccttgaagacgtcactgaatatgagatcactgctgaagggaga
cggataacaaagcttgatcagattttactaaatggaaacaacattgccattctggtccct
ggtggttcacctgatccagaatga
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