Castanea sativa (European chestnut): 142620916
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Entry
142620916 CDS
T11266
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142620916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142620916
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
142620916
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
142620916
NCBI-ProteinID:
XP_075650338
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Position
12:complement(13077477..13083502)
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AA seq
200 aa
AA seq
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MVTSSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGATVPALVPDWQIGECVAVWW
RPNFETIMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFNMIAK
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgacttcatcggtggtgaacacgtacccactgtcaagctacaccttcggcaccaaa
gagcccaagatggaaaaagacacctccgtcgctgatcgcctcgctcgcatgaaagtcaac
tatatgaaggagggcatgaggacgagtgtcgaagggattttgctggtacaggaacataac
catcctcacatacttcttctgcaaattggaaacactttctgcaaacttcctggtgggcgt
ttgaagccaggagagaatgaaattgagggcttgaaaagaaagctgaccagcaagcttggt
gctactgtaccagctcttgtgccagactggcagataggtgaatgtgtggctgtttggtgg
aggccaaactttgaaaccataatgtatccttattgccctccccacataacaaaacccaag
gagtgtaagaagctttttattgttcacttgtccgagagggagtactttgcagtcccaaaa
aatttgaaacttcttgctgttccattgtttgaactctatgataacgttcagagatatgga
ccagttatatcaaccattcctcagcaactctccagattccagttcaacatgattgctaaa
tga
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