Castanea sativa (European chestnut): 142620931
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Entry
142620931 CDS
T11266
Name
(RefSeq) serine/arginine-rich splicing factor SR34A
KO
K12890
serine/arginine-rich splicing factor 1
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142620931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142620931
Spliceosome [BR:
csaa03041
]
Common components
Common spliceosomal components
SR proteins
142620931
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RAP1
Motif
Other DBs
NCBI-GeneID:
142620931
NCBI-ProteinID:
XP_075650359
LinkDB
All DBs
Position
12:complement(6348155..6355363)
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AA seq
299 aa
AA seq
DB search
MSGRFSRTIYVGNLPSDIREWEVEDLFHKYGRILDIELKIPPRPPCYCFVEFDNARDAED
AIKGRDGYNFDGCRLRVELAHGGRGPSSSDRRGGYGGGGGGGGGGGGGGGGRSGDGGGGG
GSRFGISRHSEYRVVVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGLVDYTNYD
DMKYAIRKLDDTEFRNPWARAYIRVKKYEGSPPRSRSRSRSRSRSRSRSRSRSRSRSRSR
SRSRSRSVRRDRSKSLERSISRSVSRSRSASPVKSSRPRSRSRSRSRSGSPRQARSGSG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgtttttctcgcacaatctatgtaggcaacctgccctcagatataagagaa
tgggaagttgaagatctatttcacaagtatggccgtatattagacatcgaattgaagatt
ccaccccgccctccatgttattgttttgtggagtttgataatgctcgggatgcagaagat
gcgatcaagggtcgtgatggctataactttgatggttgtcgtttaagggttgaacttgcc
catggtggtaggggtccatcttcaagcgatcgtcgaggtggctatggtggtggtggtggt
ggtggtggtggtggtggtggtggtggtggtggtaggagtggtgatgggggagggggtggt
gggagccgatttggtatctcacgccattctgaatatcgagttgttgttcgtgggctccct
tcttctgcttcctggcaagatttgaaggatcatatgcgaaaagctggtgatgtatgtttt
gctgaggtgtcccgtgacggtgaagggacttttggccttgttgattacacaaattatgat
gacatgaaatatgctattcggaaactcgatgacactgaattcagaaatccttgggcaaga
gcttatattcgggtgaagaagtatgagggcagtcccccaagaagtcgtagtagaagtcga
agtcgcagtcgcagtcgcagtcgcagtcgcagccgtagccgcagccgcagccgtagtcgt
agccgtagccgtagcagaagtgtaagaagggaccggagcaaatcattggagcggtctatt
tctaggtcggtatcaagatccagatctgcatctcctgtcaaatcttccaggccaagatca
agatcaagatcaagatctaggtcaggatctcctcgccaggcacggtctggtagtggctga
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