Castanea sativa (European chestnut): 142621053
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Entry
142621053 CDS
T11266
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142621053
Transcription machinery [BR:
csaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
142621053
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Motif
Other DBs
NCBI-GeneID:
142621053
NCBI-ProteinID:
XP_075650486
LinkDB
All DBs
Position
12:complement(9120188..9125979)
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AA seq
515 aa
AA seq
DB search
MGVVTVSSSASRTPLGLGAKFSAQRSTSKRPLIVAFKVDKPNSTALGAPQEQIPLPIETC
KAHKTRVVKANKPSRRVKAVLTDEASPCTLEVDYNEAAAQLENIYKLSPTTETSDVENVD
GTRKSRGRRRKIIEGDLKAENRTSNSVIKNRIKKVQRLSLDKRITLKKNKENEVVTLLRK
RKVIKNENVRIEKLVREYSASTDLVSLDWRKMKIPPVLSSSEHVWLFKLMQPMKALLQVK
DNLQKDLGREPTEGELAEATNMNVVQVRKHMEVGRAARNKLIKHNLRLILFVINKYFQEF
ANRPKFQDLCQAGVKGLITGIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGL
ESVRVEIQRAKLELLFELHRLPTKEEIIKKVGISPERYHEVLKASKPVLSLHSRHAITQE
EYINGIPDVDGVGADNWKQPALQRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIA
GNLNISREMVRKHEVKALMKLKHPARVDYLRQHIA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgactgtttctagctcagcttctcgaactccattaggactgggtgcaaaa
ttctcagctcaacgctctacatcaaaaagacccttgatagtagcattcaaagtagataaa
cccaatagcacagcattgggtgcacctcaggagcaaatccctttgcccatagaaacttgt
aaggctcacaaaacgagagtagtaaaagctaataaaccttcgagaagagtgaaagctgtc
cttacagatgaagcttcgccatgtaccttggaagtggattacaatgaagccgctgcccaa
cttgaaaacatatacaagcttagcccaacaactgaaacttctgatgtggaaaatgtagat
ggcacaagaaaaagccggggaaggaggaggaagattattgaaggtgatttgaaagcagaa
aatagaactagtaatagtgttatcaagaaccgaataaagaaggttcagagattgagtctt
gacaaaagaattacattgaaaaagaataaggaaaatgaagtggttactctattacggaag
agaaaagttattaagaatgaaaatgtgaggattgagaagcttgtaagggagtactcggct
tctactgatttggttagtttggactggagaaaaatgaagatacctccagttctttcttct
tcagagcatgtttggttgttcaagttgatgcaaccaatgaaggcactccttcaagtaaaa
gataacttgcaaaaagatttgggaagagaaccaacagaaggtgaattagctgaagcaaca
aatatgaacgtggttcaagtacgaaaacacatggaggttggtcgagctgcaagaaataag
cttattaagcataatctccgtctcattttgtttgtaataaacaaatattttcaagaattt
gcaaacagaccaaaatttcaagacctttgtcaggcgggagtgaagggactcattacagga
attgatcgttttgaaccaaaaaggaaattccggctctcaacttatagtctcttttggatc
aggcatgccattatacgctccatgacactctcaagctttactcgtgtttcatttggcctt
gaatcagttagagtggaaatccagagagccaaacttgagttgttgtttgagcttcataga
ttaccaacaaaggaagagataatcaaaaaagtggggatctcccctgagaggtatcacgaa
gttctgaaggcctcaaaacctgttttgtctctacattcaaggcatgcaatcacacaagag
gagtacataaatgggatcccggatgttgacggtgttggagctgataactggaagcaacct
gctcttcaaaggcttgctcttgacgatgtgcttgattccttgaagcccaaggagagcttg
gttatcagacagagatatgggcttgatggtaaaggtgatagaacattgggagagattgct
ggcaacttaaatatttcaagagaaatggttcggaagcatgaagttaaggctctcatgaag
ctcaagcatccagctcgagtggattatcttcgccaacatatagcataa
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