Castanea sativa (European chestnut): 142621659
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Entry
142621659 CDS
T11266
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 45
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142621659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142621659
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142621659
Spliceosome [BR:
csaa03041
]
Complex A
U2 snRNP components
U2 related factors
142621659
Complex B
142621659
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
142621659
NCBI-ProteinID:
XP_075651101
LinkDB
All DBs
Position
1:16151046..16157161
Genome browser
AA seq
1240 aa
AA seq
DB search
MDEGKHKSRREDSERSEVEDLKESKRSHRDRDRERDKERNGERHRDRDRDRDRVKKDRDS
RRSEREKSSESDDKERNGERHRERDREKKDRDSRRSEREKSSESDEKERIGERHRDHERE
KKDRDSRRSEREKSSDSDDKLDRNREKHRDRDKDKDRTRSRDDDRERERAREKKRERDRE
EREREREREREREREKEKRERAREKEREREREREKREREREERERERERERERRERERER
EKERERERRIRDREKHREADSDDGDDNHREHDRKRRRRDDDGYKDRDRERSNSRPRKHRV
DSEESPRKKSTEDDSDKENKLTREEELKDEQRRLEEEMEKRRRRVQEWQETKRKNEEAER
EKRGEGNAEEPMSGKTWTLEGESDDEEVPPMGKIETDMDMDENVSPIDIEVGDSMLVDTE
NGVASTSQNGADGDAGDEEIDPLDAFMNSMVLPEVEKLNNTLAPPNFDDTDVDSKNKPKK
DELSNGEQPRKGSNKSMGRIMQGEDSESDYSDLEDDEDPVQEEDDDEFMKRVKKTKAEKL
SVVDHSKIDYEPFRKNFYIEVKEIVKMTSEEVVAYRKELELKIHGKDVPKPIKTWHQTGL
TSKILETIKKLEYESPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPP
VVAGDGPIGLIMAPTRELVQQIHSDIKKFSKVLGIRCVPVYGGSGVAQQISELKRGTEIV
VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF
SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRLENERFLRLLELLGEWYEK
GKILIFVHSQEKCDALFRDLIKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA
ARGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALE
LSEQAVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYG
FEEDKSDSDDDDDSIRKAGGDISQHTALAQIIAAASKVSTASTPMPTPVSAVQLLPNGGL
PVTLPTIGLAIPGTTAAVSATGLPVVANDGAGAARAAAIAAALNLQKNLLKLQEVAMPEH
YEAELEINDFPQNARWRVTHKETLGPISEWTGAAITTRGQYFPQGRIPGPGDRKLYLFIE
GPTEQSVKRAKSELKRVLEDITNQGSQPNSAAQPGRYQVL
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggggaagcataaatctaggagggaggattcggagaggagtgaggtggaggat
ttgaaggagtcgaagcggagccaccgtgatcgtgatagagaaagagataaggagagaaat
ggggagagacatagggacagagacagggaccgggatagggtgaagaaagaccgtgatagc
aggcgttctgagagagagaagagtagtgaatctgatgacaaggagagaaatggggagaga
catagggagcgggatagggagaagaaggaccgcgatagcaggcgttctgagagagagaag
agtagtgaatctgatgagaaggagagaattggggagaggcatagggaccatgagagggag
aagaaggaccgagatagtcggcgttctgagagagagaagagtagtgattctgatgacaag
cttgatagaaatagggagaagcatagagacagggacaaggataaggataggacacgaagt
cgggacgacgacagagaaagagagagagccagagaaaagaagagggaaagagacagggaa
gagagggagagagaaagggagagggagagggagagggaaagggagaaagagaagagggag
agggcaagagagaaagaaagagagagggaaagagaaagggagaagagggaacgtgagaga
gaagagcgagagagggagagagagagggaaagggagaggagggagcgtgaaagagagaga
gagaaggagagagaaagagagaggaggatacgggatagggagaagcatcgagaagccgat
agtgatgatggtgatgataatcatagggagcatgataggaagcgacgcaggagagacgat
gatggttacaaggatagagatcgtgaacggagcaatagcaggcctcgcaagcacagggtt
gatagtgaagagagcccaagaaaaaagagtactgaggatgattctgataaggagaataaa
ttgacccgtgaagaggagttgaaggatgagcagcggagattggaggaggaaatggaaaag
cggaggaggagagtgcaggagtggcaggagacgaagagaaaaaatgaagaagctgagaga
gaaaagcgtggggaagggaatgctgaggaacccatgtctgggaagacctggacccttgaa
ggagaatctgacgatgaagaagtacctcctatggggaaaatagagacagatatggacatg
gatgaaaatgtcagtcctattgacattgaagttggggattcaatgttggttgatactgag
aatggagtagcatccacttcacagaatggggctgatggtgatgctggggatgaggaaatt
gatccattggatgcctttatgaattctatggtattgcctgaagttgagaagctaaacaat
actttggcacctccaaattttgatgatacggatgtggactcaaagaataaacctaagaag
gatgaattaagtaatggtgaacagccaaggaaaggttcaaataaatctatggggagaata
atgcagggtgaagattcagagtcagattatagtgaccttgaggatgatgaggatcctgta
caagaagaagatgatgatgagttcatgaaaagggtgaagaagacaaaagctgagaagctt
tctgtagttgaccactctaagattgattatgaaccgttccggaaaaacttctatattgaa
gtgaaagagatcgttaagatgacttctgaagaggttgttgcttaccgaaaagaattggaa
ttgaagatacatggtaaggatgtaccaaagccaattaaaacctggcaccaaacagggctt
acgagtaaaatcttggagacaataaagaagctggaatatgaaagtccaatgccaattcaa
gctcaggctctgcctataattatgagtggtcgagactgcataggcattgccaaaactggc
tcaggcaaaacccttgcatttgtgctgccaatgttgaggcatatcaaggaccagccacct
gtggtagctggagatggacctattgggcttataatggcacctacaagggagcttgtacag
cagattcacagtgatataaagaagttttccaaggtacttggtatcaggtgtgtgcctgtg
tatggaggttctggtgttgctcaacaaatcagtgaattgaagcgtggtacagagattgtt
gtctgtactccgggtaggatgattgacatactttgcacaagtggggggaaaattacaaat
ctgcgtagagtcacatatttggttatggatgaagctgatcggatgtttgacatgggtttt
gagcctcaaattactcgaattgttcaaaatattcggccagatcgccaaacggtactcttt
tctgcaactttccctcgtcaggtagaaattttggcacgtaaagtgttaaacaaacctgtg
gagatacaggttggtgggagaagtgttgtgaacaaggatataacacagttggttgaggtg
aggctggaaaatgaaaggttcttaagattgctagaactacttggggaatggtatgagaaa
gggaaaattttaatttttgtccactcgcaggagaaatgtgatgctttgttcagggatctc
atcaagcatggttatccttgcctctcgcttcatggggctaaggaccagactgaccgtgaa
tccaccatttctgattttaagagcaatgtctgcaatttgctgattgctacaagtattgct
gctaggggtttagatgtgaaggagcttgaattggtggttaactttgacgttccaaaccac
tatgaagattatgtccatcgtgttggtcgtacaggtcgagctggtcggaaaggttgtgct
atcacatttatttctgaggaagatgcaagatatgcacctgatcttgtaaaagcattggaa
ctttctgagcaagctgttcccgatgacctgaaagctcttgctgatggttttatggcaaaa
gtgaatcagggacttgagcaagcccatggtactggttatggtggaagtggttttaaattt
aatgaagaggaagatgaggtgaggagagctgcaaagaaagcacaggccaaagaatatggt
tttgaagaagacaagtcagattcggacgatgatgatgacagtatacggaaggcaggtggt
gacatatcccagcatactgccttagctcagataattgctgctgcctccaaagtcagtact
gcgagtacacctatgccgacccctgtctctgctgtacaactgcttcccaacggtggacta
cctgttacactgccaacaattggtctagcaatacctggaacaacggcagcggtgtctgcg
actggcttgcctgttgttgccaatgatggagcaggggcagctcgggcagcagcaattgca
gcggctctcaacttacagaaaaatttgttgaagcttcaagaagttgctatgccagaacac
tacgaagcggagttggagataaatgattttccccagaatgctcgatggagggttacccac
aaggaaactttgggcccaatttcggagtggactggagctgctattactacgagggggcag
tatttcccacaaggtcggatcccaggacctggcgaccgcaagctctacttgttcattgag
ggccctactgaacagtctgtcaagagagctaaatcagaattaaaacgagttttggaagac
atcacaaaccagggatcacaaccaaacagtgcagcccaacctggcagataccaagtttta
taa
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integrated database retrieval system
