Castanea sativa (European chestnut): 142622231
Help
Entry
142622231 CDS
T11266
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
142622231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csaa04131
]
142622231
Membrane trafficking [BR:
csaa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
142622231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
142622231
NCBI-ProteinID:
XP_075651788
LinkDB
All DBs
Position
1:12146861..12160281
Genome browser
AA seq
790 aa
AA seq
DB search
MMINGIEDEDKWLAEGIAAIQHNAFYMHRALDANNLREALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRMYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGVQHPIRGLFLRSYLAQISRDKLPDIGSEYEGDADSVMDAVEFVL
QNFTEMNKLWVRLQHQGPGRVREKLEKERSELRDLVGKNLHVLGQIEGVDLGMYKDAVLP
RVLEQIVNCSDDLAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDVKTVLSQLME
RLSNYAASSTDVLPEFLQVEAFAKLSSAIGRVIEAQVNMPIVGAITLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSSKPKLEDQRAKKQVVALLSAPLEKYNDAVMALTLSNYPRVMD
HLDNETNKVMAMVIIESIMKNYTCISTADQVEVLFELIKGLIKDLDGTAADELDEEDFNE
EQNSVARLIHMLYNDDPEELLKIICTVKKSIMKGGPRRLPFTVPPLIFSALRLIRQLQSQ
DGDVAGEEVPATPKKIFQILNEMIESLSAVPSPELALRLYLQCAEAANDCGLEPVAYEFF
TQAFVLYEEEIADSKAQVTAIHLIIGTLQRLNVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVTRGNSGPVTLFVEILN
KYLYFFEKGNPQITSAAIQGLIELITTEMQSESTAPNAASDAFFASTLRYIQFQKQKGGA
MGEKYDSVKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatgataaacggaattgaggacgaagataaatggctggccgaagggatcgccgccatt
caacacaacgccttctacatgcaccgcgctctcgacgccaataatctccgagaagcccta
aagtactcggctcagatgctatcggagcttcgaacttcgaaactctcacctcacaaatac
tacgaactctatatgcgagcgttcgatgaattgaggaagctggagatgttcttcaaagac
gaaagcaggcacggggtttcgattgttgatctctatgaacttgttcagcacgctggcaac
attttgcctagaatgtatctcctatgtacagtaggatctgtgtacatcaaatctaaggag
gctcctgctaaggatgtccttaaagatctcgtggaaatgtgtcgtggtgttcaacatcca
atccgtgggctctttttaagaagttatcttgctcaaatcagtagagataaattacctgat
attggttcagaatatgaaggagatgctgactctgtcatggatgctgtagaatttgtgctc
cagaatttcactgagatgaataagctttgggtacgactgcagcatcagggacctggtcgg
gtgagagagaagctggaaaaggaaaggagcgagctccgtgatctggttgggaaaaatctc
catgtgctcggtcaaatagagggcgtggaccttggaatgtacaaagatgctgttcttccc
agagtattagagcagattgtcaactgcagtgatgacctcgctcaatattatctgatggat
tgcataattcaggtctttcctgatgagtaccatttgcagacccttgagacattattgggt
gcttgcccccagcttcagccaacagttgacgtcaagacagtgttatctcaattaatggag
agattatcaaattatgctgcttcaagtacagatgtgttacctgaatttctgcaagtggaa
gcttttgcaaaattgagcagtgctattgggagggtgatagaagcacaggtcaacatgcct
atcgttggagccataactttatatgtctctcttcttacatttactctccgtgttcatcct
gatcgacttgattatgtggatcaagtactgggagcatgtgttaagaagctctctagcaaa
ccaaaacttgaagaccaaagagcaaaaaaacaagtcgttgcacttctgagtgctccactg
gagaaatacaatgatgctgtcatggccctgacactttctaattacccccgtgtgatggac
caccttgataatgaaacaaataaagtcatggcgatggttattattgaaagcatcatgaag
aattacacttgcatctctactgctgatcaggttgaggtgttgttcgaattaattaaaggg
ctcatcaaggacttggatggaactgctgcggatgagcttgatgaggaggattttaacgaa
gaacaaaattctgttgctcggctcattcacatgctttataatgatgacccagaggaattg
ttaaagatcatatgtaccgtgaagaagagtataatgaagggaggaccaagacgcctgcct
tttactgttcctcctcttatattttctgcactcaggttgataaggcaattacaaagtcag
gatggggatgtagcaggagaggaagtgcctgcaactccaaagaaaatttttcagatatta
aatgagatgatcgaatctctttccgctgttccatctcctgaactggcattaaggttgtac
ctgcaatgtgctgaggctgctaatgactgtggtcttgagcctgttgcttatgaatttttc
actcaggcatttgtattatatgaagaagaaattgcggactccaaagcccaggtgactgca
atacacctgataattggaacccttcagaggttgaatgtatttggtgttgagaatagagat
actctaacacacaaggccacagggtattcagcaaagcttctaaagaaacctgatcagtgc
agagcggtttatgcatgttcacatcttttttgggttgatgatcaggatggaattaaggat
ggagaaagggtcctgctgtgcttaaagcgtgccttgaggattgcaaatgctgctcaacag
atggccaatgttacacggggtaacagtgggccagtcacactctttgttgaaatactgaac
aagtacctttatttttttgagaagggaaacccccaaattactagcgctgcaatccagggt
ctaatagaattaatcacaactgagatgcaaagcgaatctacagcccccaatgctgcttca
gatgctttctttgctagcacactgcggtacatccagtttcagaaacagaaaggcggtgca
atgggtgaaaaatatgattctgtcaaggtttga
DBGET
integrated database retrieval system
