KEGG   Castanea sativa (European chestnut): 142623180
Entry
142623180         CDS       T11266                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    142623180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142623180
   03036 Chromosome and associated proteins [BR:csaa03036]
    142623180
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     142623180
Chromosome and associated proteins [BR:csaa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     142623180
    COMPASS/SET1 complex (yeast)
     142623180
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_Gbeta EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_Aladin Beta-prop_SPT8 PAC11 Beta-prop_WDR36-Utp21_1st Beta-prop_ACSF4 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_NOL10_N KNTC1_N TRM82_WD Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N Cytochrom_D1 VPS11_N Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 142623180
NCBI-ProteinID: XP_075652694
LinkDB
Position
2:complement(33361317..33366568)
AA seq 332 aa
MGGSQSEREDKVSLELNEEIIQSMEVGMAFRDYNGRISSMDFHKTSSYLVTASDDESIRL
YDVATASCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRAQGRPATAYDEQGLVFAIAF
GGCIRMFDARNYEKGPFDIFSVGGDTSDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTL
LSTYNVKPVSSNSTLEASFSPEGMFVISGSGDGSVYSWSVRSGKEVASWMSTETEPPVIK
WAPGSLMFVTGSSELSFWIPDLSKLGSYAGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atgggtggctctcaatccgaaagagaagacaaggtttcattggagctgaatgaagagatt
attcaaagcatggaagtcggcatggctttcagagactataatggtagaattagttccatg
gattttcataagacttcaagttatctagtaacagctagtgatgatgaatccattcgcctt
tatgatgttgccactgcaagctgtttgaagacaattaacagcaaaaagtatggggttgat
ctggtttgctttacttctcaccctacaacagtcatctactcttcaaaaaatggctgggat
gaatccctgaggttactatcattgcacgacaacaaatatttgcggtattttaaaggtcac
catgacagggttgtgtcactcagcttgtgctctcgcaaagaatgctttatctctggttct
cttgatcgaactgttttgctttgggatcaacgagctgagaagtgtcagggtcttttacgt
gcacaaggaaggcctgctacggcatatgatgaacaaggactagtctttgcaattgccttt
ggaggatgcattagaatgtttgatgctcgcaactatgaaaagggcccttttgacatcttt
tctgttgggggagatacatctgatgcaaatgttgtaaagttcagtaatgatgggagactt
atgcttttgacaactatggatggacatattcatgtgcttgattcattccgtggcacactt
ttatccacatataatgtcaagcctgtttcaagcaattccacattagaggcatcattcagc
cctgagggaatgtttgttatctcaggttcaggtgatggaagtgtttattcttggagcgta
cgaagtgggaaagaagttgctagttggatgagtaccgaaactgagcctcctgtcataaaa
tgggctcctggaagtctgatgttcgtcactggctcttctgaactgtcattctggatacca
gacttgtctaagttgggatcttacgctggaaggaagtag

DBGET integrated database retrieval system