KEGG   Castanea sativa (European chestnut): 142625476
Entry
142625476         CDS       T11266                                 
Name
(RefSeq) small ribosomal subunit protein RACK1-like
  KO
K14753  guanine nucleotide-binding protein subunit beta-2-like 1 protein
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03010  Ribosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    142625476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142625476
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csaa04147]
    142625476
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     142625476
Exosome [BR:csaa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   142625476
  Exosomal proteins of colorectal cancer cells
   142625476
  Exosomal proteins of bladder cancer cells
   142625476
SSDB
Motif
Pfam: Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd DSE1_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 CFAP251_N Beta-prop_EML ASA1 Beta-prop_WDR41 ANAPC4_WD40 Beta-prop_NWD2_C Beta-prop_SPT8 TRM82_WD Beta-prop_WDR75_2nd Beta-prop_VPS8 PROPPIN WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_Aladin eIF2A Beta-prop_WDR19_1st PAC11 Tricorn_2nd Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 142625476
NCBI-ProteinID: XP_075655240
LinkDB
Position
2:50303513..50304331
AA seq 214 aa
MVKPQTPPPFAQTQTLSHSPAQTQTLSHFEALLRPHRLLLLLSRDRTIKLWNTLGECKFT
ISDQEAHQDWVSCVRFSPNTLQPTIVSASWDKIVKVWNLTNCKIKNTLAGHTGYVNTVAV
SPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAIIHALCFSSNRYWLCAATEQSIKIWD
LESKSIVEDLKVDLKTKAEKADDTTSSNSTKNKV
NT seq 645 nt   +upstreamnt  +downstreamnt
atggtgaagccgcaaacccctcctccatttgcccaaacccaaactctctctcactcacct
gcccaaacccaaactctctctcatttcgaagctcttcttcggcctcaccgactcctcctc
ctcctctcccgtgaccgcacgatcaagctctggaacacccttggagaatgcaagttcact
atctctgaccaagaggcgcaccaggactgggtctcgtgcgttcgtttcagccccaacact
ctccaacccaccatcgtttcggcgtcgtgggataagattgtgaaggtttggaacttgacc
aactgtaagattaagaacacattggctggacacaccgggtatgtgaacaccgtcgcggtt
tcgcccgatgggtcactttgtgccagtggtgggaaagatggggtgatccttttgtgggat
ttggctgaggggaagaagctgtactcgcttgacgcgggtgccattattcatgccctctgc
ttcagttctaataggtactggctttgcgccgccacggagcagagcattaagatctgggat
ttggagagtaagagcattgttgaggatttgaaggtggatctcaagactaaggctgagaag
gccgatgacaccacctcttccaatagtacaaagaataaggtataa

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