Castanea sativa (European chestnut): 142625645
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Entry
142625645 CDS
T11266
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
142625645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csaa04131
]
142625645
Membrane trafficking [BR:
csaa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
142625645
Hops complex
142625645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
zf_RING_Vps8_fungal
Beta-prop_EML
zf-C3HC4_2
TPR_11
zf-RING_5
DBD_Tnp_Mut
Motif
Other DBs
NCBI-GeneID:
142625645
NCBI-ProteinID:
XP_075655428
LinkDB
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Position
2:54768659..54772863
Genome browser
AA seq
964 aa
AA seq
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MYQWRKFEFFEEKNAGKLNKISPPSSSEEDNSAAVKIECCSSGRGKVVIGYDDGTISLLD
RGLNFNFSFHAHSSSVLFLQHLKQRNFLVTIGEDEQISPQQSSMCLKVFDLDKMHQPEAT
STSTSTNSTTPDCIGILRIFTNQFPQAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDI
GRERITRFRLEVDDNRSSSNSITGLGFRVDGQALQLFAVTPVSVTLFSLQDQPPRRQTLD
HIGSSVYSVTMSDRLELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQ
RNGKHTFNVYDLKNRLIAHSIVVKEVTHMLCEWGNIILIMADKSALCIGEKDMESKLDML
FKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYINTIGHLEPSYVI
QKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVGKLNIFIKSEDGVGEQK
FDVETAIRVCRAANYHEHAMYVAKKAGRHELYLKILLEDLGRYDEALHYISGLEPSQAGV
TVKEYGKILIEHKPVETIEILMRLCTEDKESVKRGASSAYISMLPSPVDFLNIFIHHPES
LMDFLEKYTTKVKDSPAQVEIHNTLLELYLSNDLNFPSISQANNNEDLNLKAVGKLVADG
KDSAKETDCLERRDKGLRLLKSAWPSELEHPLYDVDLAIILCEMNAFSEGLLYLYEKMKL
YKEVIACYMQAHDHEGLIACCKRLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKEVLTY
IERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTLAMR
KEVQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSV
MEMKRSLEQNSRDQDQFFQQVKSSKDGFSVIAEYFGKGIISKTSNGSTGAGALGSANTSS
GSGL
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggaggaaattcgaattcttcgaggagaaaaacgccgggaaattgaacaaa
atatcgccgccgtcttcgtcggaggaagataattcggccgccgtcaaaatcgaatgctgc
tcaagcggaagaggcaaggtagtgatcggctacgacgacggcacaatcagcctcctcgat
cgcggcctcaacttcaatttctccttccacgctcactcttcctccgtcctctttctccaa
cacctcaagcaacggaactttctagtgacgatcggagaagatgaacaaatttcgccgcaa
caatcctcaatgtgcctcaaggttttcgatctcgacaaaatgcatcagccagaggccaca
agcacaagcacaagcacaaactccaccactccagattgtatcggaatcttacgtattttc
actaatcagttccctcaagcaaagattacttcgtttttagtgttagaggaagcgccgccg
attttgcttatagctattggattggataatggttgtatctactgtatcaaaggtgacatt
ggacgtgagcgtataactcgttttaggcttgaagttgatgataaccggtcgtcgtcaaat
tcgataactggtctaggtttcagagtggatggtcaagcacttcaattatttgctgttact
ccagtttcggttaccttgtttagtttgcaggatcaaccgcctcgacggcaaaccctagat
catattggatctagtgtttatagtgttaccatgagtgaccgtttggagttgataattggt
cggccagaggcagtgtatttttatgaggtggatgggcgtggtccgtgttgggcttttgaa
ggagagaagaaattcttggggtggttccgtggttacctattatgtgtgattgcggatcag
agaaatggtaagcatacgttcaatgtttatgacttgaagaaccgtttgattgcacatagt
atagtggttaaagaggttactcatatgctttgtgaatggggtaatatcatacttataatg
gctgacaaatcggctttgtgtatcggggagaaggatatggaaagcaagttagatatgctg
tttaagaaaaacctttatactgtggctataaaccttgttcaaagccagcaagctgatgca
gcagcaactgcagaggtgttaagaaagtatggagatcatttgtatagcaagcaagattat
gatgaggctatggcccagtatattaacactatcggtcatcttgaaccttcttatgtgata
cagaagttcttagatgcacagagaatctacaaccttaccaactacttggagaagttacat
gagaaggggcttgcttctaaagaccatacaactttgctcttaaactgttacacgaaattg
aaagatgttgggaagctaaatatattcattaaaagtgaggacggtgttggggagcagaag
tttgatgtggaaactgctatacgagtttgccgtgctgctaattatcatgagcatgcaatg
tatgttgcaaagaaggcagggaggcatgaattgtacttaaagatcttacttgaagacctt
ggtagatatgatgaagccttgcactatatttcaggtcttgagccaagtcaagcaggggta
acggtgaaggaatatggtaagattctcatagagcacaagccagtggaaacaattgagatt
ctcatgagactttgcacagaggataaagaatcagtcaagcgaggagcttcaagtgcatac
atatctatgttgccatctccggttgattttctcaacattttcatccatcatccagaatcc
cttatggattttcttgaaaaatataccaccaaggtaaaagactcgcctgctcaagttgaa
atccacaacacactcttggagttgtacttgtccaatgacttgaactttccatctatctca
caagctaacaacaatgaagatcttaatcttaaagctgttggaaaattggttgctgatggc
aaagattcagctaaggaaacagactgtctggaaaggcgtgacaagggattgcgtttgctt
aagagtgcatggccatctgagctagaacatccactttatgatgttgatttagctatcatt
ctgtgcgaaatgaatgcatttagtgaagggctattgtacttatatgaaaagatgaaactc
tacaaagaggtgattgcttgctatatgcaggcacatgaccatgagggattaattgcatgc
tgcaaaagattgggggattcagttaaaggaggggatccatctctttgggctgatttgctg
aagtattttggtgaacttggagaagattgctctaaagaagtgaaggaagttttgacctat
atcgaaagggatgacatcttgcctcctattattgttcttcaaacgctgtccagaaatcca
tgcctcacactctccgtcattaaggattatattgctcgaaagcttgaacaggaatcaaag
cttattgaagaggaccggcgagctattgagaagtatcaggaagacactctggcaatgaga
aaagaagttcaggatctcaggacaaatgccagaatatttcagcttagcaagtgcactgca
tgcactttcacacttgatctccctgctgtacattttatgtgtatgcattcattccatcag
cgttgccttggggataatgaaaaagaatgtcctgagtgtgctcctgaatatagatctgtt
atggaaatgaagagaagcttggagcagaattctagagaccaggatcagttctttcagcaa
gtgaagagttcaaaggatggattttctgtgattgctgagtattttggaaagggaatcata
agcaaaacaagtaatggatccacaggtgcaggtgctcttggatcagccaacacttcttcc
ggcagtggcctctga
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