Castanea sativa (European chestnut): 142627339
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Entry
142627339 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142627339 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
csaa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142627339
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
142627339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142627339
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
142627339
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
142627339
NCBI-ProteinID:
XP_075657296
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Position
3:complement(43937414..43944070)
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AA seq
658 aa
AA seq
DB search
MDPVAEEQIDYEDEEYGGAQKLQYQGSGAIPALADDELMGEDDDYDDLYNDVNVGEGFLQ
LHRSEAPLPPGGVGNGGLQTQKTDVPEQRVEAAGAQEMGIPGVSVEGKYSNPGVHYPEQK
EGPSAIKAPEMGSSSYPDGSSVSHRGRVVEMPHDPQFRNMGFQGSTSVPPNSGVDPSDMP
GKIPNEPMPVLNSATGGPRGTQQMPSNQINVNANVNHPIINESQIRPPVENGQTMLFVGE
LHWWTTDAELEGILSQYGRVKEIKFFDERASGKSKGYCQVEFYDSVAAASCKEGMNGHVF
NGRPCVVAFASAQTLKQMGASYMSKNQAQNQSQPQGRRPMNEGGGRGNNMNYQSGDGGRN
YGRGGWGRGGQGVLNRGPGGGPMRGRGGAMGAKNMVGNNAGVVSGAGGGGYGQGLAGPAF
GGPAGGMMNPQGMMGTGFDPTYMGRGGGYGGFPGPAFPGMLPSFPAVNTMGLAGVAPHVN
PAFFGRGMAANGMGMMGSAGMDGHPANMWNDTSMGGWGGEEHGRRTRESSYGGDDGASEY
GYGEGNHEKGARSSAASREKERGSERDWSGNSERRHRDDREQDWDRSEREHREPRYREEK
DSYREHRPRERDLGYEDDWDRGQSSSRPRSRSRAMPEEDHRSRSRDVDYGKRRRMPSE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggatccagtggctgaagagcaaatagattatgaagatgaggaatatggaggggctcag
aagctgcaatatcaaggaagtggagccataccagcccttgcagatgacgaactgatggga
gaagatgatgactacgatgatctctacaatgatgtaaatgttggagaaggtttccttcag
ttgcaccggtctgaggctccactcccacctgggggtgttggcaacggaggacttcaaact
cagaaaactgatgttcctgaacaaagagtggaagctgcgggtgcacaagagatgggcatt
cctggggtttcagttgaaggaaagtattctaatcctggtgtgcattatcctgagcagaag
gaggggccatctgccataaaggcaccagaaatgggatcttctagttacccagacgggtct
tcggtctcacacagagggagggttgttgaaatgcctcatgatccccaattcagaaacatg
ggatttcaaggatccacatctgtgccccccaattctggggttgatccttctgatatgcct
ggaaaaattcctaatgagcccatgcctgtgctgaattctgccactggtggtcctcgaggc
actcaacagatgccttctaatcaaatcaatgtgaatgcaaatgtcaatcatccgataatt
aatgaaagtcagatccggccacctgtagagaatggtcaaaccatgctgtttgtgggagaa
ctacattggtggacaactgatgcagagcttgaaggtattttatcccaatacggaagggtc
aaggaaattaagtttttcgatgagagagctagtggtaaatccaaaggctattgtcaagtt
gaattctatgattcggttgctgcagcttcttgcaaagagggaatgaatggtcatgttttc
aatgggcgaccttgtgttgtggcctttgcttctgcacaaacattgaagcagatgggagct
tcttatatgagcaagaaccaagctcagaatcagtctcagcctcaaggaaggaggccaatg
aatgaaggtggtgggagagggaacaatatgaattatcaaagtggagatggaggaagaaat
tacggacggggtggatggggacggggcggccagggtgtactcaatcgaggtcctgggggt
ggaccaatgagaggaagaggaggggctatgggtgcaaagaacatggttgggaacaatgct
ggagttgtaagtggtgctggaggaggaggttatggacaaggccttgcaggtcctgcattt
gggggtcctgctggtggtatgatgaatccacagggcatgatgggtactgggtttgatccc
acatatatgggtcgaggaggtggttatgggggtttcccaggtcctgcttttcctggaatg
cttccttcatttccagctgttaatacgatggggcttgctggggtggcacctcatgtcaat
ccagccttctttggtcggggaatggcagctaatggaatgggaatgatgggttctgctgga
atggatggtcatcctgcaaatatgtggaatgacacaagcatgggtggatggggaggagaa
gaacatggtcgaaggacgagggagtccagttatggtggtgatgatggtgcttcagaatat
gggtatggagagggaaatcatgaaaaaggagcaaggtcaagtgctgcctctagggaaaaa
gagcggggatctgagcgtgactggtcaggaaactctgagaggaggcatcgtgatgatagg
gagcaagactgggacaggtctgaaagggaacacagggagccccgttacagggaagaaaaa
gacagttaccgagaacatcggccaagagaacgtgacttgggttatgaggatgattgggat
agagggcagtcttcttcaagacctcggagcaggtcccgagcaatgccagaagaagatcat
aggtctcgatccagggatgtggattatggaaagagaagacgcatgccatcagagtga
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