Castanea sativa (European chestnut): 142627738
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Entry
142627738 CDS
T11266
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csaa03000
]
142627738
03036 Chromosome and associated proteins [BR:
csaa03036
]
142627738
Transcription factors [BR:
csaa03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
142627738
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
142627738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
AAA_34
REV
Motif
Other DBs
NCBI-GeneID:
142627738
NCBI-ProteinID:
XP_075657719
LinkDB
All DBs
Position
3:18496929..18546933
Genome browser
AA seq
1507 aa
AA seq
DB search
MEEKPEEADDVESTSSDSFIDGLEDGSEDDGPSTSGQDEGMRLEDPLTEEEIEELIAEFL
EVESKRLKKHLKRIPLPMWRVKLERSWHRLSKGTMLVYLETAVADEMSTLIEEWETALDE
LETESAHLLEQLDGAGIELPSLYKWIESQAPNGCSTEAWKKRVHWVGSQTTSEVTESVAD
AENFLQIHRPVRRRHGKLLEEGASGFLQKKLAVDGSKEAVTENPEVDWSSLNKIFSDGVS
VDDTTFGSKNWASVYLASTPQQAAVMGLKFPGVNEVEEIDDIDGSFNDPFVAAAIANEKE
LDLSEEQKKNFRKVKEEDDANVDLKLQIHLKRRRHRQRRKQEVSQKFVSAVDQVIDSNLD
KSSSWVDNSLPVSNEKNCEDGNGLPNDHNEVACQNVQTDMLEASETCNDRDNKGPMNNTP
SLSEPALPDHTGPRGSKRPNEIEELKVDNKKSRTVIIDSDDETHSVKENSHPNATNLDPD
SNSKENIGEPGADSIPLQSQNEKFNCTACSKLAVEVHQHPLLKVIICRDCKSLMEHKMQM
KDSDCAECYCGWCGGGSDLVSCKSCRTLFCTTCIKRNIGAECLSGIQTLGWKCCCCCPSL
LQRLSLQLEKAMGSGTLIVSSSSDSDNSDSDSDSDSDVNVAYSSKRRNKKKIRRILDDAE
LGEETRRKIAIEKERQERLKSLQVQFSAKSKIMSSVGSNGNLSEGASVEVLGDASTGYVV
NVVREKGEEAVRIPPSISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL
GKTFQVITFLYTAMRSIDLGLKTALIVLPVNVLHNWRQEFMKWRPSELKPLRVFMLEDVS
RERRAELFAKWRAKGGVFLIGYTAFRNLSLGKNVKDRHMAREICYALQDGPDILVCDEAH
MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN
PIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKNDLPPKTVFVIAVKLSPL
QRKLYKRFLDVHGFTKDKVSNEKIIKRSFFAGYQALAQIWNHPGILQLTKEDKDYVRRTE
DAVENFLVDDSSSDENIDYNMDIGDKPKSANDYLQGKNGAGFLPKDWWNDLLHGNNFKEL
DYSGKMVLLLDVLTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRSGKRGKFWKKGKDWY
RLDGRTESSERQKLVERFNEPTNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYD
LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKESLAARVVDRQQVGRTISKEEM
LHLFEFGDDENLETLADLGLENGHTSNNNMTGQVGNSQTMPPQGSCSSDKIMESLLGKHY
PRWISNYHEHETLLQENEEEKLSKEEQDMAWEVYQRTLEWEEVQRVPLDESASERKPDAS
SMPPPAPETSLSQSKMRNRLVQRKCTNLSHLLTLRSQGTKGGCTTVCGECAQEISWEDLN
RDGKTAR
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagccagaggaagctgatgatgttgagagcacttctagcgattcttttatt
gatggcctagaagatggctcagaagatgatggaccatcaacatctggacaagatgagggg
atgcgtcttgaggatcctttgactgaggaagaaatagaagagctgattgctgagttcttg
gaagttgagagtaagaggctcaagaagcacttgaaaaggattcccttgccaatgtggaga
gtgaagttagagaggagttggcacagactctccaaggggacgatgttagtttatttggaa
acggctgttgcagatgaaatgagtacgcttatagaagagtgggaaactgcgcttgatgag
cttgagaccgagagtgctcatttgttggaacaacttgatggtgctggtattgagctacca
agcctttataagtggattgaaagtcaggctcctaatggttgcagcactgaagcttggaaa
aagagggtgcactgggttgggtctcagacaaccagtgaagttactgagtcagtagctgat
gctgagaactttcttcaaatccacaggcctgtaagaagacgacatggtaaactattggaa
gagggtgcaagcggatttctgcagaaaaaacttgctgttgatggaagcaaggaggctgta
acagaaaatccagaggttgattggtcctctctcaacaaaatattttctgatggtgtatca
gttgatgacactacatttggcagcaagaattgggcctctgtatacttagccagcactccg
cagcaagcagcagtgatgggacttaaatttcctggagtcaatgaggtggaggagattgat
gacattgatggaagttttaatgacccatttgttgcagctgctattgcaaatgaaaaggaa
ctagatctttctgaagaacaaaagaaaaattttagaaaggttaaagaagaagatgatgca
aatgtagatctgaaactgcaaattcatctcaaacggaggagacataggcagagacgtaaa
caggaggtcagtcagaaatttgtttccgcagttgatcaggtcatagatagcaatttagat
aagtcctcgtcgtgggttgacaattctcttcctgtttcaaatgagaaaaattgtgaagat
gggaatggtctgcctaatgatcacaatgaggttgcctgccagaatgtccagacggatatg
cttgaagcttctgaaacttgtaatgatcgtgacaataaagggccgatgaataatactcct
tcattgtctgagcctgctttgcctgatcatactggacctaggggttccaagcgtccaaat
gagattgaggagctaaaagttgataacaagaagagtcggactgttatcatagatagtgat
gatgaaactcattctgtgaaggaaaattcccatcctaatgccactaacttggaccctgat
tctaattccaaagaaaatattggtgagcctggtgctgattcaataccattgcagagtcag
aatgagaagtttaactgtactgcttgtagtaagctagctgttgaagtgcaccaacatcca
cttctgaaagtaattatttgccgggattgcaaaagcttaatggaacataagatgcagatg
aaggattctgattgtgctgagtgttactgtggatggtgcggaggaggcagtgatttggta
agttgcaaatcatgcaggacattgttctgcaccacttgtattaagaggaacattggtgca
gaatgcttgtctgggatacagacattgggctggaagtgttgttgctgctgtccaagtcta
ctgcagagattatcattacagttagagaaagccatggggtctggaactttgatagtttct
agctctagtgattctgataattcagattcagactcagattcagattcagatgtgaatgtt
gcatacagctctaagagaaggaacaaaaagaaaattcgaaggatccttgatgatgctgaa
ttaggagaagagactagaagaaaaattgcaatcgaaaaggaacgccaagaacgtctgaag
tctttgcaagtacagttttcggccaagtctaagataatgagctctgtgggctctaatggg
aatttatctgaaggtgctagtgttgaagtgcttggtgatgcttcaactggttatgtagta
aatgtagtaagggagaaaggggaagaagctgtcaggattcctccaagcatctcggctaaa
ttgaaggcccatcaggttacggggataagatttatgtgggaaaatatcatacagtctatc
agaaaagtgaagtctggggataaaggtcttggttgcattttagctcataccatgggcctt
ggtaaaacttttcaggtcataactttcttgtatactgctatgagaagtatcgacttggga
ttaaaaactgcactcattgttcttccggtgaatgtgctacataattggcggcaggagttt
atgaagtggaggccttcagagttaaagccacttcgtgtcttcatgctggaagatgtatca
agggaaagaagagctgaattgtttgctaagtggagggctaagggtggtgtcttcttgatt
gggtatacagcttttcggaacttatcccttggaaagaatgtaaaggatcggcacatggcc
agagaaatttgttatgccttgcaggatggacctgatatacttgtttgtgatgaggcccat
atgattaagaatacgagggctgacacaacccaagccttgaaacaagtgaaatgccagcga
aggattgcattaactggatcacctcttcagaacaatctcatggaatattattgtatggtt
gattttgtaagagagggttttcttggaagcagccatgagtttaggaaccgcttccaaaat
cctattgagaatggtcagcatactaattcaactcttgatgatgtgaaaattatgaaccaa
aggtctcatatcctctatgaacagttgaaaggatttgtccagaggatggacatgaatgtg
gtgaagaatgacttgccgcccaaaactgtctttgtgattgctgtaaaactttctcccttg
caaaggaaattatacaagagatttcttgatgtgcatggattcactaaggacaaggtttcc
aatgaaaagattataaagagaagtttttttgctgggtaccaggcattggctcagatatgg
aaccatcctgggatcttacaattgaccaaagaagataaagactacgtaagaagaactgaa
gatgctgtagagaattttctcgtggatgacagttctagtgatgaaaacatagattataat
atggatattggagataagccaaagagtgcaaatgattatctgcagggaaaaaatggtgcc
ggctttcttccaaaggattggtggaatgatcttcttcatggcaataattttaaagagctt
gattacagtggcaagatggttttactgcttgatgtcctaaccatgtcttctgatgtgggg
gataaagtgttggtttttagccagagcataccaaccctagatctcatagaactttatctt
tcaagattacctcgaagtggcaaaagaggaaagttttggaagaaaggaaaggactggtat
aggctagatggaagaaccgagagctctgagaggcaaaagctggttgagagatttaatgag
cccacaaataagagggtgaagtgtactcttatttcaacaagagccggatctttggggatt
aatcttcatgctgctaatcgtgtagttattgttgatggttcttggaatccaacatatgat
cttcaggctatataccgggcttggaggtatggccaaacaaagccggtgtttgcttaccga
ttgatggctcatggaaccatggaagaaaaaatttataagcgtcaggtgacaaaggaaagt
ctagctgcaagggtggtagatagacaacaggtaggtaggactatctctaaagaagagatg
ttgcatctctttgaatttggtgatgatgagaacctggaaactttggctgatctgggccta
gagaacggacatacaagtaacaacaatatgacaggccaagttgggaattctcagacaatg
cctcctcaaggaagttgctcttcagacaagataatggaaagtttacttggaaagcattat
ccaagatggatctccaattaccatgaacatgagacccttttacaagagaatgaagaagaa
aagctatcaaaagaagagcaagacatggcttgggaagtataccagagaacgttagaatgg
gaggaagtgcagcgagttcctctggatgaatctgcatctgaacggaagccagatgcgtca
agcatgccccctcctgcaccagagaccagcctttcacaatctaagatgaggaatcggttg
gtacagaggaaatgcactaacctttcacacctgttgacacttagaagccagggcacaaaa
ggtggttgcactacggtatgtggggaatgtgcccaggagataagctgggaggacctcaat
cgggatggtaagacagcgaggtga
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