Castanea sativa (European chestnut): 142628133
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Entry
142628133 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142628133 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142628133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142628133
Spliceosome [BR:
csaa03041
]
Complex C
Other components
Step II factors
142628133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
142628133
NCBI-ProteinID:
XP_075658254
LinkDB
All DBs
Position
3:48321779..48328539
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AA seq
592 aa
AA seq
DB search
MDLIQTYKDQNDEDIGELEDRTENPISTTSSPEASPPRLLAAKSAAPKVDDTMLALTVAQ
AHQAHSRPIDPVQHVVAFNPTYDQLWAPIVGPAHPYAKDGIAQGMRNHKLGFVEDASIES
FVFDEQYNTFHKYGYAADPSASAGNNYVGDLDALQKNDAISVYNIPQHEQKKRKIEKKET
EKEEGNDQEENVDKIELQNPATDTWLMKNRKSPWAGKKEGLQTELTEEQKKYAEEYAKKK
GEERERGGEKGEILPDKSTFHGKEERDYQGRSWIAPPKDAKANNDHCYIPKRLVHTWSGH
TKGVSAIRFFPKHGHLLLSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIWFCNDGTKF
LTAGYDKNIKYWDTETGQVISTFSTGKIPYVVRLNPDDDKQNILLAGMSDKKIVQWDMNT
GQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI
SLHPSTNYLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD
GEGKCWFWDWKTCRVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatctcatccaaacctacaaagaccaaaatgatgaggacattggtgaactagaggac
cgaaccgaaaaccctatttccaccacatcatcccccgaggcctccccacctcgcctcctt
gccgccaagtctgcagcaccaaaggtggatgacaccatgttggccctcacggtggctcaa
gcccaccaagcccattcaaggccaattgacccagtccagcatgttgttgcctttaacccc
acctatgaccagctctgggcccccattgttggcccagcccacccttacgccaaggatggc
atcgcccagggcatgcgcaaccacaagctcggctttgtcgaggatgcttccattgaatct
tttgttttcgatgagcagtacaatactttccacaagtatggctatgctgctgacccctct
gcctctgccggcaacaattatgtcggtgatcttgatgccttgcaaaagaacgacgccatc
tctgtctacaacatcccacaacacgagcagaagaagaggaagattgagaagaaggaaaca
gagaaggaggaaggcaatgaccaagaagaaaatgttgataagattgagcttcaaaatcca
gcaactgacacttggttgatgaagaataggaagagtccgtgggcaggcaagaaggaagga
ttacaaactgaattgacagaagagcagaagaagtatgcggaggagtatgcaaagaagaag
ggtgaggagagagagagaggcggtgaaaagggtgagattcttccagataagagtacattc
catggtaaagaagagagagattatcaaggaaggtcttggattgcacctcccaaggatgcc
aaggccaacaacgatcattgttatataccgaagagattggtgcacacttggagtggccac
acgaagggtgtgtctgcaataaggttcttcccaaaacatgggcatctgttattgtcggct
gggatggatacgaaggtgaaaatttgggatgtgttcaattcgggcaagtgtatgaggacc
tacatgggtcactccaaggcagtgagggatatttggttttgcaatgacgggacaaagttt
ttgacggctgggtatgataagaatatcaagtactgggacacagagacagggcaagtgata
tctacttttagtaccggcaagattccatatgtggttaggcttaatccagacgatgataag
cagaacattttgttggcagggatgagtgataagaagattgttcagtgggatatgaatact
ggacagattacacaggagtatgatcaacatttgggggcagtgaatactattacatttgtt
gataataacaggaggtttgtgacttcgagtgatgacaagtcgcttcgagtatgggagttt
gggatacctgtggttataaaatatattagtgagcctcatatgcattctatgccatccatt
tcacttcatcccagtacaaattatcttgctgcacagagtttggacaatcagattcttata
tatagcacaagggagaggtttcagctcaataagaagaagaggtttgctgggcacattgtg
gcagggtatgcttgccaagtcaatttctcgccagatggccggtttgttatgtcaggagat
ggtgagggtaaatgctggttttgggattggaagacatgccgagttttcagaactctcaag
tgtcacgagggagtgtgtattgggtgtgagtggcacccattggaacaaagcaaggtagca
acttgtggctgggacggattgattaagtactgggactag
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