KEGG   Castanea sativa (European chestnut): 142628228
Entry
142628228         CDS       T11266                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03018  RNA degradation
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142628228
  09123 Folding, sorting and degradation
   03018 RNA degradation
    142628228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142628228
   03041 Spliceosome [BR:csaa03041]
    142628228
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     142628228
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     142628228
Spliceosome [BR:csaa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    142628228
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 142628228
NCBI-ProteinID: XP_075658400
LinkDB
Position
3:complement(7938848..7942514)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY
IRGNTIKYLRVPDEVIDKVQEESKTRADRKPPGVGRGRGRGREEGGGARQVKGIGRGGDD
AGGRGMGGGRGRGTSAGRTGSSRGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctccctctttcattgctcaagactgctcaagggcatcctatgttagtcgagctgaaa
agtggtgagacttacaatggacatttggtgaattgtgatacatggatgaatatccatctt
cgagaagtcatatgtacctcaaaggatggagatagattttggagaatgcctgactgttac
attcgggggaatactattaagtatcttcgggtcccagatgaggtgattgataaagttcag
gaggagtccaagacccgtgcagatagaaagccacctggtgtggggcgtggaaggggaagg
ggtagagaggaaggtggtggtgcaaggcaagtgaaaggcattgggcgtggtggagatgat
gcaggtggcagaggcatgggtggaggtcggggtagaggaacttctgcaggcaggactggt
agcagcagaggtggacgtggacgtggctga

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