Castanea sativa (European chestnut): 142628228
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Entry
142628228 CDS
T11266
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142628228
09123 Folding, sorting and degradation
03018 RNA degradation
142628228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142628228
03041 Spliceosome [BR:
csaa03041
]
142628228
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142628228
mRNA degradation factors
5'-3' decay
Lsm complex
142628228
Spliceosome [BR:
csaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142628228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
142628228
NCBI-ProteinID:
XP_075658400
LinkDB
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Position
3:complement(7938848..7942514)
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY
IRGNTIKYLRVPDEVIDKVQEESKTRADRKPPGVGRGRGRGREEGGGARQVKGIGRGGDD
AGGRGMGGGRGRGTSAGRTGSSRGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgctccctctttcattgctcaagactgctcaagggcatcctatgttagtcgagctgaaa
agtggtgagacttacaatggacatttggtgaattgtgatacatggatgaatatccatctt
cgagaagtcatatgtacctcaaaggatggagatagattttggagaatgcctgactgttac
attcgggggaatactattaagtatcttcgggtcccagatgaggtgattgataaagttcag
gaggagtccaagacccgtgcagatagaaagccacctggtgtggggcgtggaaggggaagg
ggtagagaggaaggtggtggtgcaaggcaagtgaaaggcattgggcgtggtggagatgat
gcaggtggcagaggcatgggtggaggtcggggtagaggaacttctgcaggcaggactggt
agcagcagaggtggacgtggacgtggctga
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