Castanea sativa (European chestnut): 142629768 Help Entry 142629768         CDS       T11266                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism csaa  Castanea sativa (European chestnut) Pathway csaa03013   Nucleocytoplasmic transport csaa03040   Spliceosome Brite KEGG Orthology (KO) [BR:csaa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     142629768   09122 Translation    03013 Nucleocytoplasmic transport     142629768  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:csaa03019]     142629768    03041 Spliceosome [BR:csaa03041]     142629768 Messenger RNA biogenesis [BR:csaa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      142629768 Spliceosome [BR:csaa03041]  Complex C   Other components    EJC/TREX     142629768  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     142629768 SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Motif Other DBs NCBI-GeneID:  142629768 NCBI-ProteinID:  XP_075659920 LinkDB All DBs Position 3 Genome browser AA seq 1882 aa AA seqDB search MSLPSIDCIYVTEELVRELKNGNPSFKLSEPVPMLRFLYELCWTLVRGELPFQKCKAALE SVEFVDGLSREELGSCLADIVTQMAQDIAMPGEYRSRLTKLAKWMADSALVPLRLFQERC EEEFLWEAEMIKIKAQDLKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAS TQNVSAATIGIIKSLIGHFDLDPNRAFDIVLECFELQPDNKIFLELIPIFPKSHASQILG FKFQYYQRMEVNSPVPFGLYKLTALLVKEEFIDLDSIYAHLLPKDDEAFEHYNAFCAKRL DEANKIGKINLAATGKDLMDDEKQGDVTIDLFSALDMETEAVVERFPELENNQTLGLLTG FLCVDDWYHAHILFERLSPLNPVEHILICNSLFRLIEKSISSAYDIVHQAHFQSFGSSLG ASIDAMDVANSSVRGSFVDLPSELFQMLSCAGPYLYRDTLLLQKVCRVLRGYYLSAVERV GNSDGVLNPEIVIGGNRDPRLHLKQARSRIEEALGTCLLPSLQLIPANPAVGQEIWEVMN LLPYEARYRLYGEWEKDDEQIPMVLSARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA NPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLN LSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGLGIELVLLQELIQQMANVQYTE NLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDEPKLAVPLLLLIA QHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSALTPASAYAQMIPSLDDLVHLY HLDPEVAFLIYRPVMRLFKCQGSSDVFWPLDDSDATNISTTILDSEPTEYSGNVVLDLGP SKKPIIWSDLLDTVRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEISKQHAAL KALEELSDNSSSAITKRKKDKERIQESLDRLTSELRKHEENVTSVRRRLSHEKDKWWSSC PDTSKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP MICCCTEYEAGRLGRFLCETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ FVRVHWKWSQRITRLLIQCLESTEYMEIRNSLIMLTRISTVFPVTRKTGINLEKRVAKIK SDEREDLKVLATGVAAALAARKPSWVTDEEFGNGYLDSKPAPSLSSKSAAGNSAPAQSSS SIKLSQSEPAGGKTVAAATQHSDSVKEHILKAKPADGRLERTESVTIVKPDPGIAKLKVS LLVNGADAQSSLPSATVQSGTSRSTENPKQVDESARTLDENMAKVAPKNSTESELITTAK RSTIATSLTKPPKQDLAKADSRSGKALGRTSGPSSGDKDLSTHASEGRQVGPTNASSAVT ANGNTVSPSVKGSTPSARAPSDSHGNESKAETGASKSSDMRVSSVKEDGAEVSDVRPPSR LVHSPRHDNSANASKSSDKLQKRASPAEEPDRLVKRRKGDSETRDLEGDVRFSDRERSVD HGIEEHRPTDKPLDRSKDKSNERYDRDYRERVDRPDKSRGDDVFAEKARDRSIERYGRER SVERVQERGTDRSFDRLSDKAKDDRNKDDRSKLRYNDTSVEKSHVDDRFHGQSLPPPPPL PPNMVPQSVNTGRRDEDADRRFGATRHTQRLSPRHEEKERRRSEENSVVLQEDAKRRRDD DLRERKREEREVLSMKAEEREREREREREKANLLKDDMEAGAASKRRKLKREHLPSGEAG EYSPVAPPPPPLGVSAQSYEGRDRGERKGAMIQRTGYLDEPSLRIHGKEVAGKMTRRETD QMYDREWDDDKRRVEQKRRHRK NT seq 5649 nt NT seq  +upstreamnt  +downstreamnt atgtccctcccttctatagattgtatatacgtcacggaggaacttgttcgcgaattgaag aatggaaaccctagcttcaaactctctgaacccgtccccatgcttcgcttcctctacgag ctttgctggaccttggttcgcggcgaattgccgtttcagaagtgcaaagcggcgttggaa tcggtggagttcgtggatggattgtcccgcgaagagttgggttcttgtttagcagatatt gttacgcaaatggctcaagatattgcaatgcctggggagtatcgttctcgtctcacaaaa ttggcaaaatggatggcagattctgcactggttcctttgaggcttttccaggagcgttgt gaggaagaatttctatgggaagctgaaatgatcaagataaaggcccaggacttgaagaac aaagaggtcagagtaaatacccgtcttctttatcagcaaacaaaatttaaccttcttcga gaagaaagtgagggctatgccaagctggttacccttctttgccgagattctgaagcctca actcaaaatgtatcagcagcaacaataggcattattaagtcgttaattggacatttcgat ctagaccccaatcgtgcgtttgatatcgttttggagtgttttgaacttcagccagataat aagatctttctggaactgattccaatttttcccaagtctcatgcttcacagattcttggt tttaaatttcaatattatcagcgcatggaagtaaatagtcctgtaccgtttgggctgtat aagcttacagctttgctggtgaaggaagagtttattgatcttgatagcatatatgcacat ttacttcccaaggatgatgaggcatttgagcattataatgctttttgtgccaagcgactt gatgaggccaacaagattgggaagataaatcttgccgctactgggaaagatttaatggat gatgagaaacaaggagatgtgacaatagatcttttttccgcattagatatggaaactgag gcagttgttgaacgatttccagagcttgaaaataaccaaacgttaggcttgcttactgga ttcctttgtgtcgatgactggtaccatgcacatatactatttgaacgtctctcacccctc aatccagtggaacacattctaatttgtaacagcttgtttaggcttattgaaaaatcaatc tcttcggcatatgacattgtccatcaagcacatttccaaagctttgggtcttctttggga gccagcattgatgctatggatgtagcaaattcatcagttcgtgggtcttttgttgatctt cctagtgagctattccagatgctttcttgtgctggaccttacctataccgtgatactcta ttgcttcagaaggtatgtagagtattgagaggctactacttgtctgcagtagagcgtgta ggtaatagtgatggagtactgaatcctgaaattgttattggtgggaatcgagatccccgt ctgcacctgaaacaagctaggtcaaggatagaggaagccctaggaacatgtctacttcct tctttacaattgatccctgcaaatccagcggttggccaagagatctgggaagtaatgaat ctccttccatatgaggcgcggtaccgattatatggtgaatgggaaaaagatgatgaacag attcctatggttttgtctgcaaggcaaacagccaagttggacactagaagaattttgaaa aggcttgcaaaggaaaatttaaagcaactgggccggatggttgcaaaactagctcatgcc aatccaatgacggtacttagaacaattgttcatcagattgaggcctacagggatatgatc actcctgtagtagatgcattcaagtatttgacccagctcgagtatgatgttttggaatac gttgtgattgagcgtttggcacaaggtgggcgtgataaactaaaggatgatggcctaaat ttgtcagactggcttcaatctttggcttcattttggggtcacctgtgtaagaagtatcca tccatggaattgaggggtcttttccagtatcttgtgaaccagttaaagaaggggctagga attgagcttgttctcttgcaggagcttattcaacaaatggcaaatgtccagtatacagag aacctgactgaagaacagctggatgccatggcgggtagtgagactctccggtatcaggca acttcttttggagtaactcgaaataacaaggcattgatcaagtccactaacaggctacgg gactcattgcttccaaaggacgaaccaaagctggctgttcctcttttgttacttattgct caacatcgttctttggttgtcataaatgcagatgccccttatataaagatggttagtgag cagtttgatagatgccatggtactcttcttcaatatgtggaattcctttgtagtgcattg acaccagcttcagcttatgctcaaatgattccctcgcttgatgatcttgtccatctttac caccttgatcctgaggttgctttcttaatatatcgccctgtaatgagactcttcaagtgt caggggagttctgatgtcttctggcctttagacgacagtgatgctacaaatatttctact acaatcttggattctgaacctacagaatactctggcaatgttgttctggatcttggcccc tcgaagaagcctataatttggtctgatcttcttgataccgttagaaccatgttgccttca aaagcctggaatagcctgtcgcctgatctctatgctacattttgggggcttactctctat gatctttacgttcctagaaatcgatatgagtctgaaatttccaagcagcatgctgctctt aaggctctggaagagctttctgataattcaagttcagcaatcaccaaaaggaagaaagac aaagaaagaattcaagaatctctagatcgcctgactagtgaactccgtaagcatgaagaa aatgttacatctgttcgtagacggctttctcatgaaaaagacaagtggtggagttcctgc cctgatacttcgaagatcaacatggagttccttcaacgttgtatttttcctcgctgtact ttcagtatgccagatgctgtctattgtgccatgtttgtgcacactcttcattcccttgga acaccattttttaacacagtgaatcacattgatgttctgatatgtaaaaccttacaacct atgatatgctgctgtactgaatatgaagcgggtagacttggaaggtttctgtgtgagaca ctaaagattgcatactattggaagagtgatgaatctatttatgaacgtgagtgtggaaac atgccaggctttgctgtgtattatagatatccaaacagccaacgagttacatatggccag tttgttagggtacattggaaatggagtcaaaggataacgcggttgttgattcagtgcttg gaatctactgagtacatggaaattcgaaattctcttataatgttgacaaggatttctact gtcttccctgttactcgaaagactggtattaaccttgagaagcgggtagctaagatcaaa agtgatgaaagagaggatctcaaggtgttggcaacaggtgttgctgcagctttggctgct agaaagccttcatgggtgacagacgaagaatttggcaatggctatcttgatagtaagcct gcaccatcactttcttcaaagtctgctgctggtaattcagcacctgctcaaagtagctct tccattaaactttctcaaagtgaacctgctgggggaaaaacagttgccgcagcaacccaa cattctgattctgtgaaagagcatatattaaaagcaaaaccagcagatgggaggttggaa agaacagaaagtgttacaattgtgaagcctgatcctggaattgcaaaactaaaagttagt ttgttggttaatggggcagatgcccagtcatccttgccctcggctactgtacaatcagga acatcaaggtcaactgagaatccaaaacaagtggatgaatctgcaagaacattggatgaa aacatggctaaagttgctccaaagaattctactgaatctgagttgataactacagcaaaa cgctcaaccattgctacatcacttactaagccacctaaacaagatcttgcaaaagctgat agtagatctggaaaagctcttggcaggacgtctggcccttcaagtggtgacaaggatctt tcaactcatgcatcagagggcaggcaggttgggcctactaatgcttcctctgcagtcact gcaaatggcaacacagtttcaccttcagttaaaggttcaactccatctgctagagcacca tcagatagtcatggtaatgaatcaaaggcagagactggcgcttccaagtcttctgatatg agggtttcttctgtaaaggaagatggagctgaagtttctgatgtacggcccccttctcgt cttgttcattctcctaggcatgataattctgcaaatgcttcaaaatctagtgataaactg caaaagagagccagtcctgctgaagaacctgatagactagttaaacgccggaaaggggac tctgaaacaagagatttagagggtgatgttcgattttctgatagagagagatctgtagat catggaattgaagaacataggccaacagataagcctttggatagatcaaaagataagagc aatgagagatatgacagggactacagggaaagagtggatcgtcctgataagtcccgtggg gatgatgtttttgctgaaaaagcaagagataggtcaattgaaagatatggaagagagcgt tcagttgagagagttcaagagagaggtactgataggagttttgatagactctctgacaaa gctaaggatgatagaaacaaagatgacagaagtaaattaaggtacaatgatacatcagta gaaaaatctcatgttgatgataggtttcatggtcaaagcttgcctccacctccaccctta ccacctaatatggttccccaatctgtcaatactggtagaagagatgaagatgcggataga agatttggagccactagacatactcaaaggctatctccaaggcatgaagagaaagaacgg aggcgatctgaagagaattctgtagttttgcaggaggatgcaaaacgtagaagagatgat gatcttcgagagagaaagcgggaggagcgggaggtgctgtcaatgaaggcagaggagagg gaaagagaaagagagagggagagggagaaagcaaaccttttaaaagatgacatggaagcg ggtgcagcttctaagaggcggaaactcaaaagggagcatctgccatcgggtgaagcaggt gagtattcacctgtggccccacctcctcccccccttggtgttagtgcacaatcatatgaa ggaagagacaggggagaacgaaagggagcaatgatccagcgcacaggttacttggatgaa ccaagtctaaggattcatggtaaagaagttgctggcaaaatgacccgtcgcgaaaccgat caaatgtacgaccgtgagtgggatgatgataagaggagagttgaacaaaagcggagacat cgaaagtaa

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