Castanea sativa (European chestnut): 142630285
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Entry
142630285 CDS
T11266
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142630285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142630285
03041 Spliceosome [BR:
csaa03041
]
142630285
03032 DNA replication proteins [BR:
csaa03032
]
142630285
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
142630285
Spliceosome [BR:
csaa03041
]
Complex A
U1 snRNP components
Sm proteins
142630285
U2 snRNP components
142630285
Complex B
U1 snRNP components
142630285
U4/U6.U5 tri-snRNP components
142630285
Complex C
U2 snRNP components
142630285
DNA replication proteins [BR:
csaa03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
142630285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
142630285
NCBI-ProteinID:
XP_075660383
LinkDB
All DBs
Position
4:13272413..13276921
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AA seq
94 aa
AA seq
DB search
MFLILFFLTYAQDGKVQQLKPVFIRGSKVRFMVILDMLMNVSMFKRQDARITSKGATLGV
GRGRAVAMLAKAIVKFRDRLPKTNMGLVRPPSSG
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgttcttaatcttgtttttcttgacttatgcacaagacgggaaggtccaacaacttaag
cctgtctttattcgaggcagcaaagtcaggtttatggtcatactagacatgttgatgaat
gtgtcaatgtttaagcgtcaggatgccaggatcacgagtaagggtgcaacacttggagtt
ggcaggggtagagcagttgcaatgctggctaaggccattgttaagtttagggatcgactc
ccaaaaacaaacatgggtctagtaaggccaccctccagtggatga
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