Castanea sativa (European chestnut): 142632402
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Entry
142632402 CDS
T11266
Name
(RefSeq) putative CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142632402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142632402
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142632402
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142632402
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
142632402
NCBI-ProteinID:
XP_075662930
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All DBs
Position
4:complement(8726612..8727559)
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AA seq
315 aa
AA seq
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MNRAVVVREVWKENLVEEFELIKLALMSYRMVSIDTEFPGSVYRPANVDKHDLGKLPPIW
NYQVIKDNVNSTNIIQLGLALCDDKGSLPHFSTGCQYVWEFNFNSFDVYNDLQNPESIEL
LERQGIDFDKNLKEGIDSADFAALMLESGLLGNHSTFTWVTFHGDYDIAHLMKILIRQSL
PYDLMRFMNLVQRIFGKRIFDLKHMVKFCDGFYGGLEKVANTLGVQRLAGKSHQAGSDTL
LTLQTFRKLLDVHFKENNNGGPRYSGHLLTRMQCVLHGLELNGCFHQFNNAGLKIITRGF
HRLNLNLYRQYAICN
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtgcagtggtagtaagagaagtgtggaaagaaaatcttgtagaggagttcgag
cttattaagttagcattgatgagctatcgcatggtgtcaatcgacacagaattccctggt
agtgtgtaccgtcctgctaatgtcgacaagcacgacctcggaaaactccctccgatatgg
aactaccaggtaatcaaagataatgtgaactccaccaacattattcagttgggtctggct
ctttgtgatgacaaaggctctcttccccattttagtaccggatgtcagtacgtatgggag
ttcaacttcaatagttttgacgtctacaatgacctccagaacccggaatcgatcgagtta
cttgagcgccaaggaatcgattttgacaagaacttgaaggagggtattgattctgccgac
tttgctgcattaatgttggaatctgggttgttgggtaatcactctactttcacttgggtt
acctttcatggtgactatgacattgcccacttgatgaaaatcttgattcggcaatcactg
ccgtatgatctgatgaggtttatgaacctggtgcagcgcatctttgggaaaaggattttc
gacttgaagcatatggtgaagttttgcgatggcttttatgggggtttagagaaagtggct
aacacactgggagtgcaacgtttggctgggaaaagtcaccaggctgggtcagataccttg
ttgactctgcaaactttcagaaagctcttggacgtgcacttcaaagaaaataacaatggt
ggaccaagatatagtggccatttgttgacgaggatgcagtgtgttcttcacggcttggag
ttgaatggttgctttcatcaattcaataatgccggcttgaagattattactcgtggcttt
cataggttaaatctgaatttgtatagacaatatgcaatatgtaattga
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