Castanea sativa (European chestnut): 142633403
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Entry
142633403 CDS
T11266
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa04120
Ubiquitin mediated proteolysis
csaa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
142633403
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
142633403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csaa04121
]
142633403
Enzymes [BR:
csaa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142633403
Ubiquitin system [BR:
csaa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142633403
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
142633403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
EIF3I
zf-C3HC4_2
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
WD40_MABP1-WDR62_1st
WD40_RFWD3
zf-C3HC4_3
Beta-prop_TEP1_C
zf-RING_2
WD40_like
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_DCAF12
zf-C3HC4_4
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
zf-RING_5
U-box
Beta-prop_SCAP
RING_XB3-XBAT31
DUF1664
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
142633403
NCBI-ProteinID:
XP_075663751
LinkDB
All DBs
Position
5:66122029..66133945
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AA seq
697 aa
AA seq
DB search
MEETSTSTGALVPTVKAETSLDLTAEPPPPEQQQPQPPPDPPPEPSAEGAAEKAEVVVGG
GGGGCGDDVDKEMLCPICMQIIRDAFLTACGHSFCYMCIVTHLNNKSDCPCCSHFLTSNH
IFPNFLLDKLLKKNSARQKAKSASPFEHLRQVLQQGCKVSIKELDGLLSLLAEKKRKMEQ
EEAETNMQILLDFLHSLRKQKLQELKEIQADLHFIKEDVNAVERFRTELYRAKERSSLKL
QMLNDETIAERARALFTEKQGSGSNCSAHSLQRQMGSQDKIADAKVQLSSQSLQRKDVYS
GLDLQSVSPSAPATARKRRVHLQFNELQECYLQKRRIWNRQSDKQEERNPNSLSREGYNP
SLDDFQSVLTTFTRYSRLRVIAELRHGDLFHAANIVSSIEFDRDDELFATAGVSRRIKVF
EFSSVVNEPADVHCPIVEMPTRSKLSCLSWNKYTKSHIASSDYDGIVTVWDVNTRQSVME
YEEHEKRAWSVDFSRTDPSMLVSGSDDCKVKIWCMQQEASVLNIDMKANICSVKYNPGSS
IYVAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSSNELASASTDSTLRVWDVR
ENLPPCTYRGHMNEKNFVGLTVNSEFIACGSETNDVFVYHKAISKPMAWHRFGSSEIDDN
DDDVGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaagagacttcaacttcaacgggcgcactggtccccacagtgaaagccgagacgtca
ctggacctcaccgccgaaccaccaccaccggaacagcaacaacctcaaccgccaccggat
cctccgccggaaccgtcggcggaaggagcggcggagaaagcggaagtagttgtaggagga
ggaggaggtggttgtggtgatgacgtggacaaggagatgttgtgtccgatatgcatgcaa
atcataagggacgcgtttctcacagcgtgtggacacagcttctgctacatgtgcattgtg
actcacctcaacaataagtccgattgtccttgttgctctcatttcctcacctccaatcac
atcttccctaatttcctgctcgataagttattgaagaaaaattctgctcgtcaaaaagca
aaatctgcatccccatttgaacatcttcgtcaggtattacaacagggctgcaaggtgtca
attaaggagctagatggcctgctgtctctccttgcagaaaagaagagaaaaatggagcaa
gaagaagctgagacaaacatgcagatcttgcttgacttcttacattccctgcggaaacag
aagcttcaagagcttaaggagatacaagccgatctccattttataaaggaggatgtaaat
gctgtagagagatttagaacagaactttacagggcaaaagagagatcctcattaaaactg
cagatgcttaatgatgaaactatagcagaaagagcacgggctttgtttactgagaaacaa
ggaagtggcagtaactgcagtgcccactctttacaaaggcagatgggatcacaggacaag
atagctgatgcaaaggttcaactgagctcccaatcacttcaaagaaaggacgtttacagt
ggtttagatttgcaatctgtttctccatcagcaccagctacagcaagaaaaaggcgggtc
catttacagttcaatgagctacaagagtgttatttgcaaaagcggcgaatttggaacaga
caatcagacaagcaggaagaaaggaacccaaattccttaagtagagaaggttataatcct
tctcttgatgattttcagtctgtgctgaccacctttacacgatacagtcgattaagggtc
attgctgaacttaggcatggtgacctttttcatgctgcgaatattgtgtcaagtatagaa
tttgatcgtgatgatgagttgtttgctactgctggtgtttcaaggcgcatcaaggttttt
gagttttcctcagtggtgaatgaaccagcagatgtccactgccctatcgtagagatgccc
acacgatccaagctgagttgcttgagctggaataagtacactaaaagccatattgctagt
agtgattatgatgggatagtgactgtttgggacgtaaacactcgtcagagtgtgatggag
tatgaggagcatgaaaagcgagcttggagtgttgatttttcacgcactgatccctcaatg
cttgtctcaggcagtgatgactgcaaggtcaaaatttggtgcatgcagcaagaagcaagt
gttcttaacatcgacatgaaagcaaatatttgttctgtcaagtataatccggggtcaagc
atttatgtggcagtgggttctgcagatcatcacattcactattatgacttgagaaatatc
agccaaccactgcacgtgtttagtgggcataaaaaagctgtttcatatgtaaaattcttg
tctagcaatgagcttgcttctgcatctactgatagcacattgcgcgtgtgggatgtacgg
gaaaatttgccaccgtgcacatatagaggccacatgaatgagaagaatttcgtgggtctc
acagttaatagcgaattcatagcttgtggcagtgagacaaatgacgtgtttgtttatcac
aaggctatctccaaacctatggcttggcatagatttggttcttcagaaatagatgataat
gatgacgatgtaggatcgtacttcattagtgctgtttgttggaagagtgatagcccaaca
atgttgactgcgaatagccaaggaacaattaaagtccttgttcttgcagcatga
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