Castanea sativa (European chestnut): 142636012
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Entry
142636012 CDS
T11266
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142636012
09122 Translation
03013 Nucleocytoplasmic transport
142636012
03015 mRNA surveillance pathway
142636012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142636012
03041 Spliceosome [BR:
csaa03041
]
142636012
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142636012
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142636012
Spliceosome [BR:
csaa03041
]
Complex C
Other components
EJC/TREX
142636012
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142636012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
142636012
NCBI-ProteinID:
XP_075666187
LinkDB
All DBs
Position
5:complement(25896199..25903288)
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AA seq
427 aa
AA seq
DB search
MGEVKDNEYEEELVDFEDDDPKALDSASAKPVSDSAKRGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVNIRIHKDMLKNECPHIVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVTR
AAELNKLLTECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagtgaaggacaacgagtacgaggaagagctagtggacttcgaagacgatgac
ccgaaagccctcgactccgcctccgccaaacccgtctctgattctgccaagaggggctat
gttgggattcacagttctggattcagagacttcctgttgaaaccagagcttcttcgagct
attgtggattcgggatttgaacatccatcagaagtgcaacatgagtgcatcccacaagct
atattaggaatggatgtcatctgtcaagcgaaatctggtatggggaaaactgctgtcttt
gttctatccagtcttcagcagattgaacctgttgctggtcaagttgctgctcttgttctt
tgccacacaagagaactagcttatcagatctgtcatgaatttgagaggttcagtacctat
ttgcctgatataagggttgctgtcttctatggtggtgtcaatatcaggattcacaaggat
atgctgaaaaatgaatgtcctcatattgttgttggaacacctggaagaatattggcgctg
gcaagggataaagatcttggattgaagaatgtgaggcattttattcttgacgagtgtgat
aagatgctagaatcactggacatgaggagagatgtgcaggagatcttcaagatgactcct
catgacaagcaagttatgatgttttcagcaactctcagtaaagagatccgccctgtttgc
aaaaaatttatgcaagagccaatggaaatttatgttgatgatgagaccaagttgactctt
cacggtcttgtacagcactacattttattgaaggaggcagagaaaaaccgcaaattgaat
gaccttcttgatgcattggatttcaatcaggttgtcatttttgtcaagagtgtgaccaga
gctgctgagctgaacaaattacttaccgagtgtaatttcccctctatctgtatccattca
ggaatggcacaggaggagaggttgaaacgttataagaatttcaaggagggacaatcaaga
attcttgtggcaacagatttggtaggaagagggattgatatagagcgtgttaacatagtc
atcaactatgatatgccagattctgctgatacatacctgcacagggtgggcagggctggt
agatttgggactaaggggcttgcaattacatttgtctcatctacatctgactccgatgtt
cttaatcaggttcaatcaaggttcgaggtggacataaaggagcttcctgagcaaattgat
acttcaacttacatgccatcatga
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