Castanea sativa (European chestnut): 142636136
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Entry
142636136 CDS
T11266
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142636136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142636136
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142636136
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142636136
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
142636136
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
142636136
NCBI-ProteinID:
XP_075666343
LinkDB
All DBs
Position
5
Genome browser
AA seq
1032 aa
AA seq
DB search
MDSEKLSSVNPRATTAASTTDLGAQKPPPPPILERFRALLKQRDDELRASAGGGGGGVDD
EDDDEIDESFVVPPPSSEEIVELYEMFLGELTFNSKPVITDLTIIAGEQKEHGKGIADAI
CARIIEVPVEQKLPSLYLLDSIVKNIGRDYVRHFSPRLPEVFCEAYRQVHPNQYNSMRHL
FGTWSAVFPPSVLNKIEAQLQFNPSVNNQSSVLATMRASESPRPTHGIHVNPKYLRQLEH
STLDTNIQHPRGTSAIKMYGQKPAIPYGEFDPGHAEVVSSQVGAQRLISTGDAGHTPFAF
GANKAHPPSTARLARPSSPSRTGPDRSLSLAGDEFAAENSPRRFVDRASPSHPFEYGLGR
VIGRDDETSGWQRKHYSDNNQKTTAVYHFGNGHEHQRPRALIDAYGNDTGKRSYNNKPLQ
VQRLDKNDIDSKVTPASWQNTEEEEFNWDDMSPNLGDRGTSNDFLSSAVPPFGSFRTRPG
FGVQSASPLEPDNRSSWSSQAQLPAVDDSSINAEDPVSLSSFGRGSTRKISGFRTERNQN
RDSRYPQEAWNMPPHLAKGRERNFHMPLLASGTSPSDCEKMTPLIDKLPDADPQISRPPT
ITSRIGPSLDSFGVEPRPGVVPSYMGVRPPLNVHNSHPPHLLPNFMQQKHMRSQFQSINA
SNTVNNLGPNGSFYIPEQQMDGFGNKELSSSKLQQLPSQHAGLIPLSQAQVTPLQPQFLP
SHEVHQSAAAVLPPHFLAAPLNHGYNSRGHGATVSTGPSNPVPGVQLNILNRPLHLQGGS
LPPLPPGPPPVPSQMMPLTQNAVPGVSSQQPSSAFPGLFDSLMAQGLISLNKQAQDSVGV
EFNADLLKVRHESAINALYADLPRQCTTCGLRFKCQEEHRSHMDWHVTKNRMSKNRKQKP
SRKWFVSVSMWLSGAEALGAEAVPGFLPTETVVEKKDDEEMAVPADEDQNACALCGEPFE
EFYSDEAEEWMYKGAIYSNAPNGLTVGMDRSQLGPIVHAKCRSESSVVSSEDFRQEEGGI
TAEGSQRKRMRI
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggactccgaaaagctctcctccgttaaccctagggccaccactgcggcctctactacc
gaccttggggcgcagaagcctcctccgccgccgattctcgagcggttcagggcgctgctg
aagcagcgggacgacgaactcagggcttcggccggaggaggagggggcggcgtcgacgac
gaagacgacgatgaaatcgacgagagcttcgtcgttccgccgccgagttccgaggaaatt
gtggagctctacgagatgtttttgggggagctgactttcaattcgaagcccgttattacg
gatctcacgataatcgccggcgagcagaaggagcacgggaaaggtatcgccgatgcgatt
tgcgctcggattatcgaggtcccagtcgagcaaaaacttccttcactatatcttttagac
agtattgtgaagaatattggccgtgattacgtaaggcatttctctccccgtctgcctgag
gttttctgtgaggcatacaggcaagttcacccaaatcagtataattctatgcgacatctc
tttggcacctggtcagcagtatttccaccttccgtccttaataagattgaggcacaactg
caatttaatccttcagtaaataatcaatcatctgtcttggctaccatgagggcttctgaa
tctccacgaccaacacatggcattcatgttaacccaaagtacctgcgtcagttggaacat
tcaactctggatactaatattcagcatcctagaggaacttcagctataaaaatgtatggt
caaaaacctgccattccatatggcgagtttgatcctggtcatgcagaggttgtatcctca
caggttggagcccagagattgatctcaactggagatgcaggtcatacaccttttgccttt
ggggctaataaggcgcatccaccttcaactgccagacttgcaagaccctcttcgccttca
aggactgggcctgataggtctttatcattggcaggtgatgaatttgctgcagaaaattct
cctagaaggtttgttgatagggcctctccatctcatccatttgagtatggacttggtaga
gtaattggtagagatgatgaaacaagtggctggcagagaaaacactattctgataataat
cagaaaactactgcagtataccactttggtaatggacatgagcaccaaagaccgagagct
ttaattgatgcgtatggaaatgacacagggaagagatcttataacaataagcctctgcag
gttcaacgcctggacaaaaatgatatagacagtaaggtcactccagcatcatggcagaat
actgaagaggaagagtttaattgggacgatatgagccccaatttaggagaccgtggtaca
agtaatgatttcttgtcatcagctgttccaccttttgggagctttagaacaaggccaggc
tttggagtgcagagtgcttcccctttggagcctgataataggagcagttggtcgagtcag
gctcagcttcctgcagttgatgattcttctataaatgctgaagatccagtctccttatca
agttttggtcgtggatcaacgcggaagatatctggattccgaactgagagaaatcagaat
cgggattctcgctatcctcaggaggcttggaatatgcctccccatctcgccaaaggaaga
gagaggaatttccatatgcccttattggcaagtggtacatctccatcagattgtgaaaaa
atgactcctcttatagataagcttccagatgctgacccacaaataagcagaccccctaca
attacatcaagaattggtcctagtcttgactcgtttggtgttgagcctcggcctggtgtt
gtaccctcatatatgggggtaagacctcccctaaatgtgcataactctcacccaccgcat
ctgctacctaattttatgcagcagaaacatatgaggagccaattccagtcaataaatgct
agcaatactgtcaataatctaggtccaaatgggtctttttatatccctgagcagcagatg
gatggttttggaaacaaggagctgagttcttcaaagctgcaacaattgcctagtcagcat
gcaggactaattcctctaagccaggcacaagtcactcctttacagccacaatttcttcca
tctcacgaggtgcatcaatctgcagcagctgtgttgccacctcattttctggcagcccct
ttgaatcatggatataattcacgagggcatggtgccactgttagtacaggtccatcaaat
cctgtacctggtgtacagttgaatatcctaaacaggcctttacatttacaggggggctca
ttgccacctctacctcccggccctcctcctgtgccatcacaaatgatgcctctcacacaa
aatgctgttcctggtgtttctagtcaacagcctagcagtgcatttcctggattgtttgat
tctctcatggctcagggtttgatctcattgaacaaacaggctcaggattctgtaggagtt
gagtttaatgcggaccttctcaaggtgcgtcatgagtctgcaataaatgccctatatgct
gatctccccagacaatgcacaacctgtggccttagattcaaatgccaagaagaacaccgt
agtcatatggattggcatgtaactaagaatcgtatgtctaaaaaccgaaagcagaagcct
tctcgtaagtggtttgtaagtgtgagtatgtggctcagtggtgcagaagcattaggagct
gaagcagttcctgggtttttacctaccgagactgttgtagaaaagaaggatgatgaagaa
atggctgtacctgctgatgaagatcagaatgcatgtgcattatgtggagagccttttgaa
gagttttacagtgatgaggcagaagaatggatgtataagggggctatttactcaaatgca
cccaatggcttgacagtaggcatggataggtctcagttaggcccaatagtgcatgctaag
tgccggtctgaatctagtgtggtttcctctgaagattttagacaagaagaagggggaatt
actgcagagggtagtcaaagaaaacgtatgcggatttaa
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