KEGG   Castanea sativa (European chestnut): 142636224
Entry
142636224         CDS       T11266                                 
Name
(RefSeq) splicing factor U2af large subunit A-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142636224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csaa03041]
    142636224
Spliceosome [BR:csaa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    142636224
 Complex B
    142636224
SSDB
Motif
Pfam: RRM_1 RRM_MUD2_C RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 142636224
NCBI-ProteinID: XP_075666482
LinkDB
Position
5:complement(38299173..38308920)
AA seq 547 aa
MSDYASIDNEERREPESESEPGRSSPLDARHSHHKQNSCGSDRERPRVRERNRDRETDGD
RHHRNYRDRSMRDDKGRGKYDDYDRHQSSHYDRHRSYGGDRERRHRHRSRSSSRDGSKNE
SRSDSRSRSRSKSKRTSGFDMAPSNADVLHGAAVPVQPPVVSQSMPGIVQNMLPFGTSQM
GALPLMPIQAMTQQATRHARRVYVGGLPPIANEQTIATFFSSVMAAIGGNSSGQGDAVVN
VYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPALAAALGPSQPSPH
LNLSAVGLTPGLIGGAEGPDRIFVGGLPYYFTEAQIRELLQAFGPLRGFDLVKDKDTGVS
KGYGFCVYQDPAVTDIACAALTGLKMGDKILTVRRATASLGQSKTEQEMILAQAQQHITM
HKMALIAGGLNLPGVAPVANAEPATKVLCLTEAITVEQLRNDQEYEEISEDMRDECSKFG
TLVGIIIPRPDQNGDWIPGVGKVFLEYSDISGCANARNALNGRKFGGNVVSAVYYPEDKY
YIKDYGA
NT seq 1644 nt   +upstreamnt  +downstreamnt
atgtccgattacgcctctattgacaacgaagaaagacgcgaacccgaatccgaatccgaa
cccggtcgctcttctcctcttgatgctcgccattcgcatcacaagcaaaattcgtgtgga
tcagatcgtgagaggccgagggttagagagcgaaatcgggatagggaaacagatggagac
cgtcatcacaggaactatagggatagaagtatgagggatgataaaggaaggggcaagtat
gatgattatgaccgtcatcaaagcagccattatgacaggcaccgttcttatggcggagac
agagagaggaggcatagacatagatcacgatcctcttctagggatggatctaagaacgaa
tccagatcagactctcgttctcgttctcgatcaaaaagcaaacgaacaagtggttttgac
atggcaccatctaatgccgatgtgctgcatggtgctgctgttccagtgcaaccaccagtt
gtttctcaatcaatgccaggaatcgtacagaacatgttaccttttgggacatcacagatg
ggagctcttcccctaatgccaatccaagccatgacccagcaggctacaaggcatgcacga
cgggtatatgttggtgggcttcctccaattgcaaatgagcagacaattgcaactttcttt
agttctgtcatggcagcaattggtggaaattcttctggacaaggtgatgcagtagtcaat
gtctacattaatcatgagaagaagtttgcgtttgtggagatgagaactgttgaagaagca
agtaatgcaatggcattagatgggattatatttgagggggttgctgtgagggtgcgaagg
cctacagactacaatcctgcattggctgcagcacttggtcctagccaaccaagtcctcat
ctcaacttatctgctgttgggctcacaccaggtttaattggtggagcagagggtcctgat
cgtatctttgttggtggactaccatactactttactgaagcacagataagagaattgcta
caggcctttggacctctccgtgggttcgatcttgttaaggataaagacacaggagtctct
aaaggatatggtttctgcgtctatcaggatccagctgtgacggacattgcttgtgctgct
cttactggcttgaaaatgggtgataaaatcttaacagtcaggcgtgctactgccagcttg
gggcagtccaaaacagagcaggaaatgatcttagcacaggcacaacagcatataactatg
cacaaaatggctttgatagctggtggtttaaatcttcctggggtagcaccagtagcaaat
gcagaacctgcaactaaagttttatgcttgactgaggcaattactgtggagcaactgagg
aatgatcaagagtacgaagaaatatccgaagacatgcgggatgaatgcagcaaatttgga
actttggtgggcatcattattcctcgtccagatcaaaatggagactggatcccaggtgtt
ggaaaggtgttcttggagtattctgatatctctggttgtgccaatgcaaggaatgcactg
aatgggaggaaatttggaggcaatgtagtgagtgccgtttattatccagaagacaaatat
tatatcaaagattatggggcttaa

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