Castanea sativa (European chestnut): 142636384
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Entry
142636384 CDS
T11266
Name
(RefSeq) polyadenylate-binding protein 6-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142636384
09123 Folding, sorting and degradation
03018 RNA degradation
142636384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142636384
03041 Spliceosome [BR:
csaa03041
]
142636384
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142636384
mRNA cycle factors
Stress granule specific factors
142636384
Spliceosome [BR:
csaa03041
]
Complex C
Other components
Complex C specific factors
142636384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RRM_3
RRM_7
RBD_DEAH11
RRM_RdRP1_2
RRM_Nup35
RRM_occluded
MLLE
RRM_MARF1
Mitovir_RNA_pol
Motif
Other DBs
NCBI-GeneID:
142636384
NCBI-ProteinID:
XP_075666707
LinkDB
All DBs
Position
5:complement(14885592..14890395)
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AA seq
575 aa
AA seq
DB search
MAAKSVSLPPQPQPQPQPQPHSQPPPGFVNSQCASLYVGDLDPQVTESDLVKLFTTVGPI
ASVRLCRDISSQKSLRYAYVNFVHHYHASMALARLNHTYLKGFPMRIMWCQRDPLSRKTG
YGNLFVKNLPPSINSLQLHSLFSKFGTILSCKVAEENGKSKGFGFVQFDIEESAMSALYA
LHDTVLDEKKLYVSKFMKKSERMAAQEELNFTNLYVKNLSEDTTEELLRDQFSKFGKVSS
VAIMKDNQGKSRGFGFINFESSEDAKNAVGALNGAFIGSKYLFVGRAQRKTEREELLKRE
YVERCNYTNEQLKASNLFVNNLSTSVDDNKLKEHFSTCGQLTSVKVMRLDNGISKGFGFV
RFSNPEDAMKALHTLNGTTLEGKTLYVAIAQRKEDRIRTLQNHYAQFSPETFYNYNWNVH
PFFYHFPPCPSSNQLLSQPIMCQDYQQYPLVTQTYHDRFSIFVPNGQKEWGNTRDQVYQQ
HLLKNNGTPGGQKLDFRKKGNKRSGPGESTYTGSAGAKGRAHAAGTSPGKSRRNLEKVLA
ENLQITGMLLENNSSDLTKLLNPPNALGCSSFGGK
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaagtctgtgtctcttccgccacaaccacagccacagccacagccacagcca
cactcacaaccaccacctgggtttgtgaattcacagtgtgcttctttatacgtgggtgac
ttggacccacaagtcacagagtccgaccttgtcaagctgttcaccaccgtgggccccatt
gcctccgttcgtctctgccgtgacatttcgtcccagaagtccctccgttacgcctacgtc
aacttcgtccatcactaccacgcatctatggctctggcccgtctaaatcacacctatctg
aagggatttcctatgagaataatgtggtgtcaaagagaccctctttcaagaaagactggt
tatggaaatctctttgtgaaaaacctacccccttcaatcaatagccttcagttgcactcc
ttgttcagcaaatttgggaccatactttcttgcaaagtggctgaagaaaatggaaagagc
aaggggtttggatttgtccagtttgatattgaggaatcagctatgagtgctctttatgct
ctccatgataccgtgcttgatgagaagaaattatatgtgtcaaagtttatgaagaaaagt
gagaggatggcagcacaagaagaactaaatttcacaaatctgtatgtgaaaaatctgagt
gaagatacgacagaggagctccttcgagatcagttctccaagtttggaaaggtttctagt
gtggccatcatgaaggataatcagggtaaatcaagaggttttggtttcatcaactttgag
tcatcagaagatgctaaaaatgctgttggggctctgaatggtgcattcataggatcaaaa
tatctgtttgtaggaagggctcaaaggaaaaccgagagggaagaactactaaaacgtgaa
tacgtggagaggtgcaactataccaatgagcagttgaaggcttcaaacttgttcgttaat
aacctcagtacctcagtagatgataacaagttgaaagaacattttagtacctgtggacaa
ttaacatcagttaaagtgatgcgccttgataatgggattagtaaggggtttggctttgtg
cgtttctccaatcctgaagatgctatgaaagctctgcatacgcttaatggaaccactttg
gaaggaaaaactctatatgtggctatcgctcagagaaaagaagatcgcataaggacattg
caaaatcactatgctcagttctcaccagaaactttctataattacaactggaatgtccac
cctttcttttatcactttcctccttgcccttcttcaaaccagctcctatcccaaccaatc
atgtgtcaagattatcaacaatatcctctagtgacacaaacttatcatgaccgcttctcc
atttttgttccaaatgggcagaaagagtggggtaacaccagggatcaggtctaccagcag
catcttttgaagaacaatgggactcctggaggtcagaaacttgacttcagaaagaagggg
aacaagcgaagtggacctggggaaagtacctatactggatcagcaggtgccaaaggcaga
gctcacgccgcaggaacatcacctgggaagtccaggaggaacttagaaaaagttcttgct
gagaatcttcagataacgggaatgctgttggagaacaactcttctgatctaaccaagctg
cttaaccctccaaatgctctaggctgttcaagttttggaggaaaatga
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