Castanea sativa (European chestnut): 142636877
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Entry
142636877 CDS
T11266
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03082
ATP-dependent chromatin remodeling
csaa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
142636877
03083 Polycomb repressive complex
142636877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csaa03036
]
142636877
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
142636877
Histone modification proteins
HAT complexes
HATB complex
142636877
HDAC complexes
Sin3A-HDAC complex
142636877
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
142636877
PRC2.2
142636877
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
142636877
Heterochromatin formation proteins
Other heterochromatin formation proteins
142636877
Chromatin remodeling factors
NuRD complex
142636877
NuRF complex
142636877
NuRF complex (fruit fly)
142636877
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
CAF1C_H4-bd
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
DSE1_N
DNAI3_WD
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
eIF2A
WDR90_beta-prop_4th
WD40_RFWD3
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
142636877
NCBI-ProteinID:
XP_075667281
LinkDB
All DBs
Position
5:10868963..10875801
Genome browser
AA seq
463 aa
AA seq
DB search
MKERGKGTEPSVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY
LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRE
LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE
PFVLSGGKDKSVVLWSIHDHISTLAADTGATKSPGSGGSSAKHASKAGGTNDKPADSPSI
GPRGVYQGHGDTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHC
VDWNPHDVNFILTGSADATVRMFDRRNLTSGGVGLPVHKFEGHSAAVLCVQWSPDKSSVF
GSSAEDGILNIWDHEKVGNVGSKMQNVPPGLFFRHAGHRDKVVDFHWNASDPWTIVSVSD
DCESTGGGGTLQIWRMIDLIYRPEEEVLAELDSFKSHILTCSS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagagagggaaaggaacagagccatcagtggatgagaggtacactcaatggaaa
tcgctggtgccagtgctctacgactggctcgccaatcacaacctcgtttggccttctctc
tcttgccgatggggtccgcaactagagcaagccacatacaagaatcgccaacgtctttac
ctttcggaacagactgatggcagtgttccaaatacccttgtcatagcaaactgtgaggta
gtaaaacctagggttgcagccgcagagcacatatcacagttcaatgaggaagcgcgttct
ccatttgtaaagaagttcaaaactattatacatcctggcgaggtgaacagaatcagggaa
ctcccacagaatagtaagatcgtggccactcacactgacagtcctgatgtccttatttgg
gacgttgaggctcaaccaaatcgtcatgctgttctgggagctacaaattctcgtccagac
ctgatactgaccgggcatcaagataatgctgaatttgctcttgctatgtgtcctactgaa
ccctttgtgctttctggaggcaaggacaagtctgtagttttgtggagtattcatgatcat
atctcgactttagcagcagacacaggggctacaaagtctccggggtctggtggcagcagc
gctaagcatgcctctaaggctggtgggactaatgataaacctgcagacagcccttctatt
ggtccacggggtgtctaccaagggcatggggataccgtagaagatgtgcagttctgccca
tcaagtgcacaggagttctgtagcgtaggcgatgattcttgccttatattatgggatgca
agagtgggatcttctccagttgtcaaggttgagaaagctcatgatgctgatcttcattgt
gttgattggaatcctcatgacgtaaatttcattctgacagggtccgctgatgctaccgtt
cgcatgtttgatcgccgtaatctcacctctgggggtgttggattgcctgttcataaattt
gagggtcacagtgcagctgtcctttgtgtacagtggtctcctgacaagtcatctgtcttt
ggaagttctgctgaggatggcattttgaacatttgggatcatgagaaggttggtaatgtt
ggatcaaaaatgcaaaatgttcctccaggcttattcttccgacatgctgggcatagggac
aaggttgtggacttccattggaatgcatctgatccgtggacaattgtcagtgtttccgat
gattgtgaaagtactggaggaggtggtacactgcagatatggcggatgattgatttgata
tacaggcccgaggaagaagttctagctgaattggattcattcaagtcccacattttaaca
tgttcctcttga
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