Castanea sativa (European chestnut): 142637915
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Entry
142637915 CDS
T11266
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142637915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142637915
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
142637915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
142637915
NCBI-ProteinID:
XP_075667995
LinkDB
All DBs
Position
6
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AA seq
203 aa
AA seq
DB search
MEDMVSSTVVNTYPLSSYTFGTKEPKIEKDSSVADRLARMKLNYFKEGMRTSVEAILLVQ
EHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANQPSLQPNWQIGECVA
IWWRPNFETVMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNLKLLAVPLFELYDNVQ
RYGPVISTIPQQLSRFQFNMITT
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatggtgagctcaacggtggtgaacacgtacccactctcaagctacaccttc
ggtaccaaagagcccaagattgagaaagactcctccgtcgccgatcgtctcgctcgcatg
aaactcaactattttaaagaaggcatgaggactagtgttgaagcaatcctactggtgcaa
gaacataagcatcctcacattcttcttttgcaaattggaaacacattctgcaaacttccc
gggggacgtttgaagcctggagaaaatgaaattgaaggcttgaagaggaaactgactagc
aaattgggtgctaatcaaccttcacttcaacctaattggcagattggtgagtgcgtggca
atctggtggagaccaaactttgaaacggtgatgtatccttactgccctccccacatcaca
aaacccaaggagtgtaagaagctttatattgttcatttgtctgaaagagagtattttgct
gtaccaaaaaatctgaaactgcttgctgttcccctttttgagctctatgataatgttcag
agatatggacctgttatttcgacaatcccacagcagctgtccagattccagttcaacatg
atcaccacctga
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